MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.2 nTPM
HPA Brain:168.6 nTPM
GTEx:111.2 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:264.9 nTPM
Mouse:94.0 nTPM
Allen mouse:11.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 168.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.5
2019 Male, age 18, unknown 180.3
2586 Male, age 75, left hemisphere 156.5
1827 Male, age 72, unknown 139.2
2666 Male, age 74, left hemisphere 128.2
2828 Female, age 72, unknown 94.3
1870 Female, age 42, unknown 92.4
2219 Male, age 76, both hemispheres 86.8
2411 Female, age 72, unknown 86.8
1833 Male, age 53, unknown 77.1
1830 Male, age 51, unknown 73.6
Dorsal raphe nucleus
nTPM: 80.0
2298 Female, age 72, unknown 101.9
1828 Male, age 53, unknown 86.4
2047 Male, age 72, unknown 77.7
2750 Male, age 76, both hemispheres 71.2
2016 Female, age 72, unknown 63.1
Inferior colliculus
nTPM: 112.9
2097 Female, age 72, unknown 139.8
1890 Male, age 53, unknown 111.2
1848 Female, age 42, unknown 104.8
2849 Male, age 72, unknown 95.9
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 106.2
1795 Male, age 51, unknown 122.9
2502 Female, age 75, unknown 110.7
1947 Male, age 18, unknown 85.0
Periaquaductal grey, dorsal
nTPM: 95.2
1840 Male, age 53, unknown 105.4
1831 Male, age 72, unknown 99.4
2464 Female, age 72, unknown 91.8
2850 Male, age 76, both hemispheres 84.2
Periaquaductal grey, lateral
nTPM: 91.5
2053 Male, age 18, unknown 97.8
2272 Male, age 74, both hemispheres 93.0
2140 Male, age 76, both hemispheres 83.9
Pretectal area
nTPM: 168.6
1816 Male, age 51, unknown 288.5
1817 Female, age 42, unknown 283.4
2007 Male, age 72, unknown 244.4
1944 Female, age 72, unknown 238.1
1815 Male, age 53, unknown 197.1
2667 Female, age 75, unknown 145.0
2407 Male, age 75, both hemispheres 102.9
2224 Female, age 72, unknown 97.7
2273 Male, age 74, both hemispheres 95.9
2316 Male, age 76, right hemisphere 81.8
2825 Male, age 18, unknown 79.7
Red nucleus
nTPM: 100.9
2785 Male, age 18, unknown 173.1
2725 Female, age 75, unknown 126.8
1821 Female, age 72, unknown 119.1
2588 Male, age 74, left hemisphere 117.0
2584 Male, age 75, left hemisphere 97.8
2503 Female, age 72, unknown 93.5
1954 Female, age 42, unknown 90.5
2823 Male, age 76, right hemisphere 88.9
1865 Male, age 51, unknown 78.1
1904 Male, age 53, unknown 78.0
2769 Male, age 72, unknown 74.1
2227 Male, age 72, unknown 73.6
Substantia nigra
nTPM: 147.8
1889 Female, age 72, unknown 191.7
1941 Male, age 53, unknown 183.6
1916 Female, age 42, unknown 165.5
1851 Male, age 51, unknown 161.9
2241 Male, age 72, unknown 157.2
2665 Male, age 74, both hemispheres 145.5
2583 Male, age 75, right hemisphere 128.7
2409 Female, age 72, unknown 126.4
2590 Female, age 75, unknown 113.3
2699 Male, age 18, unknown 104.6
Superior colliculus
nTPM: 132.8
1796 Male, age 53, unknown 186.3
2087 Female, age 72, unknown 184.9
2664 Male, age 75, both hemispheres 147.2
2261 Male, age 18, unknown 130.4
2668 Female, age 75, unknown 125.7
1895 Male, age 76, right hemisphere 119.7
2587 Male, age 74, left hemisphere 115.2
1995 Male, age 72, unknown 110.8
1913 Female, age 42, unknown 107.5
1839 Male, age 51, unknown 100.2
Ventral tegmental area
nTPM: 122.3
2223 Female, age 72, unknown 173.6
2218 Male, age 76, both hemispheres 128.9
2410 Female, age 72, unknown 126.5
1915 Female, age 42, unknown 123.9
1942 Male, age 51, unknown 110.1
2021 Male, age 53, unknown 70.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.2
Samples: 139

Max nTPM: 381.5
Min nTPM: 25.7
Std nTPM: 54.3
Median nTPM: 99.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 381.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 282.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 256.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 248.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 240.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 233.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 221.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 200.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 193.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 192.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 190.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 264.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 126.8
Samples: 4

Max nTPM: 170.5
Min nTPM: 86.2
Sample A Female 170.5
Sample B Female 119.9
Sample C Male 130.4
Sample D Male 86.2
Midbrain
nTPM: 200.7
Samples: 4

Max nTPM: 330.5
Min nTPM: 95.4
Sample A Female 95.4
Sample B Female 125.1
Sample C Male 330.5
Sample D Male 251.7
Periaqueductal gray
nTPM: 100.0
Samples: 3

Max nTPM: 103.0
Min nTPM: 94.2
Sample B Female 103.0
Sample C Male 102.7
Sample D Male 94.2
Superior colliculi
nTPM: 264.9
Samples: 4

Max nTPM: 393.5
Min nTPM: 187.0
Sample A Female 249.0
Sample B Female 187.0
Sample C Male 393.5
Sample D Male 230.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.0
Samples: 4

Max nTPM: 98.8
Min nTPM: 89.1
Sample A Male 93.3
Sample B Male 94.9
Sample C Female 98.8
Sample D Female 89.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
69838711 Antisense, RP_050317_04_F05, Mouse strain C57BL/6J (56 days, male) 14.5
73718053 Antisense, RP_051121_04_C07, Mouse strain C57BL/6J (56 days, male) 9.1

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