MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA Brain:71.1 nTPM
GTEx:40.5 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:61.7 nTPM
Mouse:64.1 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.5
2666 Male, age 74, left hemisphere 69.3
2411 Female, age 72, unknown 63.8
2219 Male, age 76, both hemispheres 61.7
2586 Male, age 75, left hemisphere 61.0
1833 Male, age 53, unknown 60.2
1827 Male, age 72, unknown 56.2
1870 Female, age 42, unknown 55.5
2828 Female, age 72, unknown 53.8
2019 Male, age 18, unknown 51.8
1830 Male, age 51, unknown 51.7
Dorsal raphe nucleus
nTPM: 62.5
1828 Male, age 53, unknown 80.3
2047 Male, age 72, unknown 68.3
2750 Male, age 76, both hemispheres 58.2
2298 Female, age 72, unknown 56.5
2016 Female, age 72, unknown 49.0
Inferior colliculus
nTPM: 48.2
2849 Male, age 72, unknown 51.8
1848 Female, age 42, unknown 51.4
1890 Male, age 53, unknown 45.0
2097 Female, age 72, unknown 44.6
Median raphe nucleus
nTPM: 62.0
2220 Male, age 76, midline 62.0
Periaquaductal grey, anterior
nTPM: 55.2
1947 Male, age 18, unknown 59.8
2502 Female, age 75, unknown 53.7
1795 Male, age 51, unknown 52.1
Periaquaductal grey, dorsal
nTPM: 49.0
1840 Male, age 53, unknown 50.6
2464 Female, age 72, unknown 50.3
1831 Male, age 72, unknown 47.6
2850 Male, age 76, both hemispheres 47.4
Periaquaductal grey, lateral
nTPM: 40.9
2140 Male, age 76, both hemispheres 43.1
2053 Male, age 18, unknown 41.6
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 52.9
1816 Male, age 51, unknown 66.7
1944 Female, age 72, unknown 61.1
1817 Female, age 42, unknown 60.9
2007 Male, age 72, unknown 60.0
1815 Male, age 53, unknown 55.8
2667 Female, age 75, unknown 52.1
2825 Male, age 18, unknown 52.1
2224 Female, age 72, unknown 50.6
2316 Male, age 76, right hemisphere 44.4
2407 Male, age 75, both hemispheres 41.9
2273 Male, age 74, both hemispheres 36.8
Red nucleus
nTPM: 49.7
2588 Male, age 74, left hemisphere 55.6
1821 Female, age 72, unknown 54.8
2725 Female, age 75, unknown 53.6
2584 Male, age 75, left hemisphere 52.9
2769 Male, age 72, unknown 50.8
2503 Female, age 72, unknown 49.9
2785 Male, age 18, unknown 49.5
2227 Male, age 72, unknown 47.2
2823 Male, age 76, right hemisphere 46.1
1904 Male, age 53, unknown 45.3
1954 Female, age 42, unknown 45.3
1865 Male, age 51, unknown 45.0
Substantia nigra
nTPM: 71.1
1916 Female, age 42, unknown 97.2
2665 Male, age 74, both hemispheres 85.9
1851 Male, age 51, unknown 77.1
2409 Female, age 72, unknown 73.2
2241 Male, age 72, unknown 71.3
2699 Male, age 18, unknown 68.1
1941 Male, age 53, unknown 65.8
1889 Female, age 72, unknown 65.0
2583 Male, age 75, right hemisphere 59.0
2590 Female, age 75, unknown 48.0
Superior colliculus
nTPM: 50.7
2668 Female, age 75, unknown 69.4
1895 Male, age 76, right hemisphere 54.2
2261 Male, age 18, unknown 52.5
1796 Male, age 53, unknown 52.4
2087 Female, age 72, unknown 51.3
1839 Male, age 51, unknown 50.4
2587 Male, age 74, left hemisphere 48.3
1913 Female, age 42, unknown 46.2
2664 Male, age 75, both hemispheres 43.2
1995 Male, age 72, unknown 39.0
Ventral tegmental area
nTPM: 61.2
2410 Female, age 72, unknown 74.1
1915 Female, age 42, unknown 69.6
2218 Male, age 76, both hemispheres 65.8
1942 Male, age 51, unknown 56.0
2223 Female, age 72, unknown 53.8
2021 Male, age 53, unknown 48.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.5
Samples: 139

Max nTPM: 84.9
Min nTPM: 22.2
Std nTPM: 11.7
Median nTPM: 37.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 84.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 74.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 72.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 64.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 61.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 60.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 57.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.7
Samples: 4

Max nTPM: 80.6
Min nTPM: 45.8
Sample A Female 80.6
Sample B Female 45.8
Sample C Male 74.3
Sample D Male 46.0
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 58.5
Min nTPM: 52.1
Sample A Female 52.1
Sample B Female 58.5
Sample C Male 54.8
Sample D Male 55.4
Periaqueductal gray
nTPM: 52.6
Samples: 3

Max nTPM: 59.4
Min nTPM: 46.5
Sample B Female 51.9
Sample C Male 59.4
Sample D Male 46.5
Superior colliculi
nTPM: 59.8
Samples: 4

Max nTPM: 70.0
Min nTPM: 43.9
Sample A Female 70.0
Sample B Female 43.9
Sample C Male 61.5
Sample D Male 63.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.1
Samples: 4

Max nTPM: 66.5
Min nTPM: 61.5
Sample A Male 62.1
Sample B Male 61.5
Sample C Female 66.5
Sample D Female 66.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
68862108 Antisense, RP_050301_01_E09, Mouse strain C57BL/6J (56 days, male) 12.0

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