MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:206.2 nTPM
HPA Brain:214.5 nTPM
GTEx:206.2 nTPM
FANTOM5:140.9 Scaled Tags Per Million
Pig:80.8 nTPM
Mouse:182.2 nTPM
Allen mouse:16.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 214.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.0
2411 Female, age 72, unknown 220.9
1827 Male, age 72, unknown 191.5
2019 Male, age 18, unknown 166.7
1870 Female, age 42, unknown 161.8
2828 Female, age 72, unknown 149.7
1833 Male, age 53, unknown 144.3
1830 Male, age 51, unknown 141.3
2219 Male, age 76, both hemispheres 139.8
2666 Male, age 74, left hemisphere 137.0
2586 Male, age 75, left hemisphere 106.9
Dorsal raphe nucleus
nTPM: 208.6
2298 Female, age 72, unknown 286.5
2047 Male, age 72, unknown 219.5
1828 Male, age 53, unknown 182.6
2750 Male, age 76, both hemispheres 179.9
2016 Female, age 72, unknown 174.8
Inferior colliculus
nTPM: 173.8
2097 Female, age 72, unknown 208.5
1848 Female, age 42, unknown 170.6
1890 Male, age 53, unknown 162.7
2849 Male, age 72, unknown 153.3
Median raphe nucleus
nTPM: 214.5
2220 Male, age 76, midline 214.5
Periaquaductal grey, anterior
nTPM: 182.1
2502 Female, age 75, unknown 191.8
1947 Male, age 18, unknown 179.1
1795 Male, age 51, unknown 175.5
Periaquaductal grey, dorsal
nTPM: 180.3
1840 Male, age 53, unknown 214.3
2850 Male, age 76, both hemispheres 180.3
1831 Male, age 72, unknown 167.8
2464 Female, age 72, unknown 158.9
Periaquaductal grey, lateral
nTPM: 190.4
2272 Male, age 74, both hemispheres 215.2
2140 Male, age 76, both hemispheres 184.2
2053 Male, age 18, unknown 171.7
Pretectal area
nTPM: 185.9
2224 Female, age 72, unknown 222.4
2273 Male, age 74, both hemispheres 218.6
2007 Male, age 72, unknown 209.0
1816 Male, age 51, unknown 195.7
1817 Female, age 42, unknown 190.9
1944 Female, age 72, unknown 186.4
2667 Female, age 75, unknown 176.7
2825 Male, age 18, unknown 171.1
1815 Male, age 53, unknown 165.3
2316 Male, age 76, right hemisphere 159.2
2407 Male, age 75, both hemispheres 149.5
Red nucleus
nTPM: 148.8
1821 Female, age 72, unknown 198.6
2725 Female, age 75, unknown 166.8
1954 Female, age 42, unknown 164.9
2785 Male, age 18, unknown 159.0
1865 Male, age 51, unknown 148.3
2503 Female, age 72, unknown 147.4
2769 Male, age 72, unknown 147.4
1904 Male, age 53, unknown 142.3
2227 Male, age 72, unknown 140.4
2588 Male, age 74, left hemisphere 130.3
2823 Male, age 76, right hemisphere 127.5
2584 Male, age 75, left hemisphere 112.5
Substantia nigra
nTPM: 197.8
1916 Female, age 42, unknown 273.4
1851 Male, age 51, unknown 227.1
1889 Female, age 72, unknown 216.2
1941 Male, age 53, unknown 211.6
2699 Male, age 18, unknown 189.6
2241 Male, age 72, unknown 189.4
2665 Male, age 74, both hemispheres 185.5
2409 Female, age 72, unknown 175.0
2590 Female, age 75, unknown 173.1
2583 Male, age 75, right hemisphere 137.4
Superior colliculus
nTPM: 160.9
1796 Male, age 53, unknown 195.1
2587 Male, age 74, left hemisphere 195.1
2087 Female, age 72, unknown 184.6
2261 Male, age 18, unknown 167.8
1895 Male, age 76, right hemisphere 164.6
1839 Male, age 51, unknown 160.6
2668 Female, age 75, unknown 156.2
1913 Female, age 42, unknown 140.8
1995 Male, age 72, unknown 135.6
2664 Male, age 75, both hemispheres 107.9
Ventral tegmental area
nTPM: 202.4
2410 Female, age 72, unknown 254.8
1915 Female, age 42, unknown 216.3
2218 Male, age 76, both hemispheres 208.8
2021 Male, age 53, unknown 183.2
1942 Male, age 51, unknown 178.7
2223 Female, age 72, unknown 172.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 206.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 206.2
Samples: 139

Max nTPM: 371.2
Min nTPM: 119.2
Std nTPM: 51.7
Median nTPM: 194.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 371.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 349.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 327.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 323.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 319.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 319.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 317.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 298.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 293.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 290.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 289.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.9
FF:10158-103A5 76 years, female 140.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.8
Samples: 4

Max nTPM: 114.5
Min nTPM: 45.2
Sample A Female 114.5
Sample B Female 71.7
Sample C Male 91.9
Sample D Male 45.2
Midbrain
nTPM: 78.6
Samples: 4

Max nTPM: 88.1
Min nTPM: 69.7
Sample A Female 69.7
Sample B Female 77.6
Sample C Male 88.1
Sample D Male 78.9
Periaqueductal gray
nTPM: 69.3
Samples: 3

Max nTPM: 80.6
Min nTPM: 60.2
Sample B Female 67.2
Sample C Male 80.6
Sample D Male 60.2
Superior colliculi
nTPM: 77.8
Samples: 4

Max nTPM: 90.7
Min nTPM: 66.6
Sample A Female 90.7
Sample B Female 66.6
Sample C Male 81.5
Sample D Male 72.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 182.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.2
Samples: 4

Max nTPM: 189.5
Min nTPM: 173.5
Sample A Male 189.5
Sample B Male 182.1
Sample C Female 173.5
Sample D Female 183.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.0
2518 Antisense, RP_040420_01_F04, Mouse strain C57BL/6J (56 days, male) 16.0
2517 Antisense, RP_040420_01_F04, Mouse strain C57BL/6J (56 days, male) 10.6

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