MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1436.5 nTPM
HPA Brain:499.2 nTPM
GTEx:1436.5 nTPM
FANTOM5:365.2 Scaled Tags Per Million
Pig:362.4 nTPM
Mouse:179.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 499.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 441.6
2666 Male, age 74, left hemisphere 541.5
2586 Male, age 75, left hemisphere 512.7
1870 Female, age 42, unknown 479.5
2828 Female, age 72, unknown 446.4
1833 Male, age 53, unknown 443.6
1827 Male, age 72, unknown 423.5
1830 Male, age 51, unknown 423.1
2411 Female, age 72, unknown 388.1
2019 Male, age 18, unknown 382.5
2219 Male, age 76, both hemispheres 375.5
Dorsal raphe nucleus
nTPM: 442.5
2298 Female, age 72, unknown 472.0
2750 Male, age 76, both hemispheres 464.7
2016 Female, age 72, unknown 439.1
2047 Male, age 72, unknown 432.0
1828 Male, age 53, unknown 404.7
Inferior colliculus
nTPM: 433.3
2849 Male, age 72, unknown 491.4
2097 Female, age 72, unknown 437.6
1890 Male, age 53, unknown 414.7
1848 Female, age 42, unknown 389.2
Median raphe nucleus
nTPM: 487.5
2220 Male, age 76, midline 487.5
Periaquaductal grey, anterior
nTPM: 461.6
2502 Female, age 75, unknown 495.1
1795 Male, age 51, unknown 461.8
1947 Male, age 18, unknown 427.9
Periaquaductal grey, dorsal
nTPM: 439.5
2850 Male, age 76, both hemispheres 500.2
1840 Male, age 53, unknown 484.7
1831 Male, age 72, unknown 412.1
2464 Female, age 72, unknown 360.9
Periaquaductal grey, lateral
nTPM: 431.5
2053 Male, age 18, unknown 479.7
2140 Male, age 76, both hemispheres 431.9
2272 Male, age 74, both hemispheres 382.9
Pretectal area
nTPM: 427.8
1817 Female, age 42, unknown 467.4
1815 Male, age 53, unknown 449.6
2825 Male, age 18, unknown 444.3
2224 Female, age 72, unknown 444.1
1816 Male, age 51, unknown 443.3
1944 Female, age 72, unknown 430.9
2007 Male, age 72, unknown 430.6
2316 Male, age 76, right hemisphere 412.6
2667 Female, age 75, unknown 408.2
2407 Male, age 75, both hemispheres 403.5
2273 Male, age 74, both hemispheres 370.9
Red nucleus
nTPM: 449.7
2503 Female, age 72, unknown 547.7
1904 Male, age 53, unknown 483.5
2584 Male, age 75, left hemisphere 479.7
2725 Female, age 75, unknown 476.9
1821 Female, age 72, unknown 473.3
1865 Male, age 51, unknown 458.6
2227 Male, age 72, unknown 430.5
2769 Male, age 72, unknown 429.9
2785 Male, age 18, unknown 423.7
2588 Male, age 74, left hemisphere 409.1
1954 Female, age 42, unknown 406.2
2823 Male, age 76, right hemisphere 377.1
Substantia nigra
nTPM: 499.2
2699 Male, age 18, unknown 607.6
1916 Female, age 42, unknown 578.2
1851 Male, age 51, unknown 567.5
2665 Male, age 74, both hemispheres 559.0
2409 Female, age 72, unknown 515.4
2241 Male, age 72, unknown 494.1
1889 Female, age 72, unknown 459.8
2590 Female, age 75, unknown 417.0
1941 Male, age 53, unknown 398.1
2583 Male, age 75, right hemisphere 394.9
Superior colliculus
nTPM: 466.3
2587 Male, age 74, left hemisphere 517.5
2668 Female, age 75, unknown 502.0
1913 Female, age 42, unknown 501.8
1796 Male, age 53, unknown 494.9
2664 Male, age 75, both hemispheres 493.6
1995 Male, age 72, unknown 489.5
2261 Male, age 18, unknown 423.4
1839 Male, age 51, unknown 421.6
2087 Female, age 72, unknown 409.3
1895 Male, age 76, right hemisphere 408.8
Ventral tegmental area
nTPM: 490.2
1915 Female, age 42, unknown 569.9
2223 Female, age 72, unknown 526.5
2021 Male, age 53, unknown 503.8
2218 Male, age 76, both hemispheres 459.3
1942 Male, age 51, unknown 454.2
2410 Female, age 72, unknown 427.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1436.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1436.5
Samples: 139

Max nTPM: 5202.9
Min nTPM: 419.8
Std nTPM: 657.7
Median nTPM: 1303.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5202.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3893.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3298.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3276.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3224.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3125.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2827.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2413.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2339.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2327.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2310.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 365.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 365.2
FF:10158-103A5 76 years, female 365.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 362.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 362.4
Samples: 4

Max nTPM: 500.4
Min nTPM: 286.9
Sample A Female 500.4
Sample B Female 364.6
Sample C Male 297.8
Sample D Male 286.9
Midbrain
nTPM: 341.2
Samples: 4

Max nTPM: 496.9
Min nTPM: 221.7
Sample A Female 496.9
Sample B Female 374.8
Sample C Male 271.4
Sample D Male 221.7
Periaqueductal gray
nTPM: 282.4
Samples: 3

Max nTPM: 305.9
Min nTPM: 258.6
Sample B Female 305.9
Sample C Male 282.8
Sample D Male 258.6
Superior colliculi
nTPM: 331.7
Samples: 4

Max nTPM: 434.1
Min nTPM: 285.2
Sample A Female 434.1
Sample B Female 285.2
Sample C Male 303.9
Sample D Male 303.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 179.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.8
Samples: 4

Max nTPM: 215.6
Min nTPM: 152.2
Sample A Male 215.6
Sample B Male 179.5
Sample C Female 152.2
Sample D Female 171.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
68441496 Antisense, RP_041214_02_E01, Mouse strain C57BL/6J (56 days, male) 1.2

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