HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:1214.3 nTPM
HPA Brain:439.8 nTPM
GTEx:1214.3 nTPM
FANTOM5:172.9 Scaled Tags Per Million
Pig:60.6 nTPM
Mouse:728.7 nTPM
Allen mouse:11.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031153Antibody CAB004027
Glial cells LowNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 439.8
Sample id Sample description nTPM
Hippocampus
nTPM: 439.8
2621 Female, age 67, right hemisphere 534.1
1898 Male, age 80, left hemisphere 469.0
2529 Female, age 94, left hemisphere 463.3
1911 Female, age 85, right hemisphere 414.0
1855 Male, age 76, left hemisphere 410.9
2148 Female, age 91, left hemisphere 347.4
Dentate gyrus
nTPM: 408.7
2530 Female, age 94, left hemisphere 558.8
2010 Male, age 76, both hemispheres 450.0
2531 Female, age 67, both hemispheres 412.0
2246 Female, age 85, both hemispheres 394.9
1927 Female, age 91, both hemispheres 320.3
2528 Male, age 74, both hemispheres 316.2
Entorhinal gyrus
nTPM: 422.5
2686 Male, age 75, right hemisphere 601.7
2117 Female, age 91, right hemisphere 421.0
1787 Male, age 76, left hemisphere 386.0
1938 Female, age 85, left hemisphere 382.3
2764 Male, age 80, right hemisphere 377.2
2613 Female, age 94, left hemisphere 367.1
Hippocampus, CA1
nTPM: 374.6
1873 Female, age 85, both hemispheres 408.8
2082 Female, age 91, right hemisphere 406.4
2045 Male, age 76, both hemispheres 393.0
2527 Male, age 74, both hemispheres 357.7
2749 Male, age 80, left hemisphere 307.0
Hippocampus, CA2
nTPM: 405.3
1963 Male, age 80, left hemisphere 466.4
1940 Female, age 85, left hemisphere 414.4
2437 Female, age 94, left hemisphere 402.4
2113 Female, age 91, right hemisphere 395.8
1892 Male, age 76, both hemispheres 394.6
2249 Male, age 74, both hemispheres 358.4
Hippocampus, CA3
nTPM: 361.7
1891 Female, age 85, both hemispheres 440.6
2861 Female, age 67, both hemispheres 412.0
1867 Male, age 76, both hemispheres 408.4
2436 Male, age 74, both hemispheres 340.4
2137 Male, age 80, left hemisphere 291.0
2620 Female, age 94, left hemisphere 277.9
Parahippocampal cortex
nTPM: 388.7
2018 Male, age 76, both hemispheres 488.2
2692 Male, age 74, both hemispheres 422.4
2532 Female, age 72, left hemisphere 407.8
1850 Male, age 80, both hemispheres 397.1
2250 Female, age 67, right hemisphere 388.8
2622 Female, age 67, right hemisphere 375.5
2245 Female, age 91, both hemispheres 372.0
1933 Female, age 85, both hemispheres 367.9
1990 Female, age 91, right hemisphere 353.0
2693 Female, age 94, both hemispheres 314.9
Perirhinal gyrus
nTPM: 372.8
1841 Female, age 85, right hemisphere 424.2
2848 Male, age 76, right hemisphere 383.8
1847 Female, age 91, left hemisphere 372.9
1794 Male, age 80, right hemisphere 363.7
2521 Female, age 94, right hemisphere 319.6
Subiculum
nTPM: 439.1
2042 Male, age 76, both hemispheres 551.5
2438 Female, age 94, left hemisphere 493.1
1901 Male, age 80, both hemispheres 424.0
1977 Female, age 85, both hemispheres 416.5
2619 Male, age 74, both hemispheres 379.7
2729 Female, age 91, right hemisphere 369.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 1214.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1214.3
Samples: 197

Max nTPM: 3229.1
Min nTPM: 471.6
Std nTPM: 488.9
Median nTPM: 1061.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 3229.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3117.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2818.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2814.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2655.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2458.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2434.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2425.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 2422.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2124.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 2082.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 172.9
FF:10169-103B7 60 years, female 197.3
FF:10153-102I9 76 years, female 148.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.6
Pig sample Sample description nTPM
Subiculum
nTPM: 56.7
Samples: 4

Max nTPM: 71.8
Min nTPM: 48.0
Sample A Female 71.8
Sample B Female 52.7
Sample C Male 48.0
Sample D Male 54.2
Dorsal hippocampus
nTPM: 60.6
Samples: 4

Max nTPM: 72.7
Min nTPM: 47.9
Sample A Female 72.7
Sample B Female 52.5
Sample C Male 69.3
Sample D Male 47.9
Entorhinal cortex
nTPM: 51.4
Samples: 4

Max nTPM: 60.2
Min nTPM: 40.1
Sample A Female 48.8
Sample B Female 60.2
Sample C Male 56.5
Sample D Male 40.1
Ventral hippocampus
nTPM: 52.9
Samples: 4

Max nTPM: 56.3
Min nTPM: 49.8
Sample A Female 53.6
Sample B Female 49.8
Sample C Male 51.7
Sample D Male 56.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 728.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 668.9
Samples: 4

Max nTPM: 708.2
Min nTPM: 647.0
Sample A Male 673.1
Sample B Male 647.4
Sample C Female 708.2
Sample D Female 647.0
Hippocampal formation
nTPM: 728.8
Samples: 4

Max nTPM: 786.1
Min nTPM: 696.6
Sample A Male 786.1
Sample B Male 696.6
Sample C Female 707.0
Sample D Female 725.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.3
69873301 Antisense, RP_050512_01_A01, Mouse strain C57BL/6J (56 days, male) 11.3

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