MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1637.2 nTPM
HPA Brain:651.5 nTPM
GTEx:1637.2 nTPM
FANTOM5:226.8 Scaled Tags Per Million
Pig:80.6 nTPM
Mouse:871.3 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 651.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 584.4
2666 Male, age 74, left hemisphere 754.1
1830 Male, age 51, unknown 626.8
1833 Male, age 53, unknown 617.4
2586 Male, age 75, left hemisphere 608.5
1870 Female, age 42, unknown 602.4
2828 Female, age 72, unknown 593.6
2411 Female, age 72, unknown 572.5
1827 Male, age 72, unknown 538.8
2019 Male, age 18, unknown 498.4
2219 Male, age 76, both hemispheres 431.9
Dorsal raphe nucleus
nTPM: 536.5
2016 Female, age 72, unknown 642.9
2750 Male, age 76, both hemispheres 551.1
1828 Male, age 53, unknown 526.9
2298 Female, age 72, unknown 487.0
2047 Male, age 72, unknown 474.6
Inferior colliculus
nTPM: 512.9
2849 Male, age 72, unknown 569.7
1890 Male, age 53, unknown 520.0
1848 Female, age 42, unknown 518.7
2097 Female, age 72, unknown 443.4
Median raphe nucleus
nTPM: 493.5
2220 Male, age 76, midline 493.5
Periaquaductal grey, anterior
nTPM: 491.8
2502 Female, age 75, unknown 535.4
1947 Male, age 18, unknown 491.2
1795 Male, age 51, unknown 448.8
Periaquaductal grey, dorsal
nTPM: 537.5
1831 Male, age 72, unknown 584.5
2850 Male, age 76, both hemispheres 545.2
1840 Male, age 53, unknown 538.6
2464 Female, age 72, unknown 481.7
Periaquaductal grey, lateral
nTPM: 514.6
2053 Male, age 18, unknown 591.7
2140 Male, age 76, both hemispheres 487.5
2272 Male, age 74, both hemispheres 464.8
Pretectal area
nTPM: 482.1
1815 Male, age 53, unknown 556.9
2825 Male, age 18, unknown 556.4
2316 Male, age 76, right hemisphere 529.5
2407 Male, age 75, both hemispheres 517.8
1817 Female, age 42, unknown 504.9
2224 Female, age 72, unknown 483.0
2007 Male, age 72, unknown 458.3
1944 Female, age 72, unknown 434.9
2273 Male, age 74, both hemispheres 430.6
2667 Female, age 75, unknown 415.2
1816 Male, age 51, unknown 415.0
Red nucleus
nTPM: 651.5
2503 Female, age 72, unknown 779.1
2588 Male, age 74, left hemisphere 714.9
1865 Male, age 51, unknown 712.9
1821 Female, age 72, unknown 680.7
2725 Female, age 75, unknown 680.7
2584 Male, age 75, left hemisphere 676.5
1904 Male, age 53, unknown 662.5
2769 Male, age 72, unknown 603.1
1954 Female, age 42, unknown 598.2
2227 Male, age 72, unknown 591.0
2823 Male, age 76, right hemisphere 582.0
2785 Male, age 18, unknown 536.8
Substantia nigra
nTPM: 609.9
2699 Male, age 18, unknown 790.0
2665 Male, age 74, both hemispheres 723.2
1851 Male, age 51, unknown 669.7
2241 Male, age 72, unknown 603.2
2409 Female, age 72, unknown 594.3
2590 Female, age 75, unknown 582.1
1916 Female, age 42, unknown 578.7
1889 Female, age 72, unknown 521.8
2583 Male, age 75, right hemisphere 520.9
1941 Male, age 53, unknown 514.9
Superior colliculus
nTPM: 561.4
2587 Male, age 74, left hemisphere 742.7
1995 Male, age 72, unknown 677.7
1913 Female, age 42, unknown 640.4
1839 Male, age 51, unknown 581.1
2668 Female, age 75, unknown 577.8
2664 Male, age 75, both hemispheres 540.5
1895 Male, age 76, right hemisphere 510.0
1796 Male, age 53, unknown 477.3
2261 Male, age 18, unknown 441.1
2087 Female, age 72, unknown 425.8
Ventral tegmental area
nTPM: 573.8
2223 Female, age 72, unknown 624.5
2021 Male, age 53, unknown 607.7
1915 Female, age 42, unknown 600.1
2410 Female, age 72, unknown 573.0
1942 Male, age 51, unknown 520.4
2218 Male, age 76, both hemispheres 516.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1637.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1637.2
Samples: 139

Max nTPM: 4993.4
Min nTPM: 558.6
Std nTPM: 674.5
Median nTPM: 1501.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4993.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4744.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3649.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3346.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2922.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2763.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2731.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2724.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2701.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2605.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2552.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 226.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 226.8
FF:10158-103A5 76 years, female 226.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.6
Samples: 4

Max nTPM: 88.7
Min nTPM: 66.4
Sample A Female 88.7
Sample B Female 83.6
Sample C Male 66.4
Sample D Male 67.8
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 97.6
Min nTPM: 57.5
Sample A Female 97.6
Sample B Female 74.9
Sample C Male 58.8
Sample D Male 57.5
Periaqueductal gray
nTPM: 62.1
Samples: 3

Max nTPM: 64.0
Min nTPM: 59.5
Sample B Female 64.0
Sample C Male 62.9
Sample D Male 59.5
Superior colliculi
nTPM: 80.6
Samples: 4

Max nTPM: 103.2
Min nTPM: 66.0
Sample A Female 86.1
Sample B Female 103.2
Sample C Male 67.1
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 871.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 871.4
Samples: 4

Max nTPM: 935.1
Min nTPM: 814.3
Sample A Male 935.1
Sample B Male 866.8
Sample C Female 814.3
Sample D Female 869.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
69873301 Antisense, RP_050512_01_A01, Mouse strain C57BL/6J (56 days, male) 11.1

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