MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:157.1 nTPM
HPA Brain:529.8 nTPM
GTEx:157.1 nTPM
FANTOM5:473.0 Scaled Tags Per Million
Pig:150.5 nTPM
Mouse:85.6 nTPM
Allen mouse:15.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 529.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 389.8
1830 Male, age 51, unknown 508.1
1833 Male, age 53, unknown 492.2
2411 Female, age 72, unknown 463.6
2019 Male, age 18, unknown 454.4
1870 Female, age 42, unknown 447.9
2666 Male, age 74, left hemisphere 396.5
2828 Female, age 72, unknown 346.2
2586 Male, age 75, left hemisphere 269.5
1827 Male, age 72, unknown 263.5
2219 Male, age 76, both hemispheres 256.5
Dorsal raphe nucleus
nTPM: 272.3
2750 Male, age 76, both hemispheres 478.8
2016 Female, age 72, unknown 296.5
1828 Male, age 53, unknown 263.4
2047 Male, age 72, unknown 168.1
2298 Female, age 72, unknown 154.7
Inferior colliculus
nTPM: 253.0
1848 Female, age 42, unknown 271.8
1890 Male, age 53, unknown 268.3
2849 Male, age 72, unknown 247.3
2097 Female, age 72, unknown 224.4
Median raphe nucleus
nTPM: 240.7
2220 Male, age 76, midline 240.7
Periaquaductal grey, anterior
nTPM: 228.4
2502 Female, age 75, unknown 283.6
1947 Male, age 18, unknown 240.0
1795 Male, age 51, unknown 161.7
Periaquaductal grey, dorsal
nTPM: 189.4
2464 Female, age 72, unknown 293.3
1831 Male, age 72, unknown 195.5
2850 Male, age 76, both hemispheres 139.0
1840 Male, age 53, unknown 129.8
Periaquaductal grey, lateral
nTPM: 178.9
2053 Male, age 18, unknown 219.0
2272 Male, age 74, both hemispheres 188.8
2140 Male, age 76, both hemispheres 128.9
Pretectal area
nTPM: 242.4
1815 Male, age 53, unknown 350.6
2316 Male, age 76, right hemisphere 342.8
1817 Female, age 42, unknown 300.0
2007 Male, age 72, unknown 271.0
2407 Male, age 75, both hemispheres 264.0
2825 Male, age 18, unknown 239.0
2224 Female, age 72, unknown 189.7
1944 Female, age 72, unknown 185.1
2273 Male, age 74, both hemispheres 181.5
2667 Female, age 75, unknown 171.7
1816 Male, age 51, unknown 171.5
Red nucleus
nTPM: 529.8
1865 Male, age 51, unknown 690.1
1821 Female, age 72, unknown 631.5
1904 Male, age 53, unknown 629.7
2823 Male, age 76, right hemisphere 574.1
2503 Female, age 72, unknown 553.6
2227 Male, age 72, unknown 523.5
2769 Male, age 72, unknown 511.3
1954 Female, age 42, unknown 506.3
2785 Male, age 18, unknown 485.8
2588 Male, age 74, left hemisphere 465.2
2725 Female, age 75, unknown 447.0
2584 Male, age 75, left hemisphere 339.0
Substantia nigra
nTPM: 312.9
2409 Female, age 72, unknown 406.5
2241 Male, age 72, unknown 366.5
1851 Male, age 51, unknown 345.4
1889 Female, age 72, unknown 339.5
2590 Female, age 75, unknown 326.3
2583 Male, age 75, right hemisphere 291.7
2665 Male, age 74, both hemispheres 284.0
2699 Male, age 18, unknown 283.7
1941 Male, age 53, unknown 257.6
1916 Female, age 42, unknown 227.9
Superior colliculus
nTPM: 325.0
1995 Male, age 72, unknown 457.1
1913 Female, age 42, unknown 451.4
1895 Male, age 76, right hemisphere 418.5
2668 Female, age 75, unknown 365.9
2587 Male, age 74, left hemisphere 358.3
1839 Male, age 51, unknown 329.6
1796 Male, age 53, unknown 238.9
2087 Female, age 72, unknown 220.0
2261 Male, age 18, unknown 218.2
2664 Male, age 75, both hemispheres 191.9
Ventral tegmental area
nTPM: 320.1
2223 Female, age 72, unknown 455.0
2410 Female, age 72, unknown 419.4
1942 Male, age 51, unknown 274.7
1915 Female, age 42, unknown 272.5
2021 Male, age 53, unknown 252.0
2218 Male, age 76, both hemispheres 247.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 157.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 157.1
Samples: 139

Max nTPM: 442.0
Min nTPM: 53.0
Std nTPM: 80.5
Median nTPM: 131.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 442.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 416.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 406.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 371.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 358.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 352.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 352.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 332.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 330.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 301.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 297.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 473.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 473.0
FF:10158-103A5 76 years, female 473.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 150.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 145.6
Samples: 4

Max nTPM: 253.7
Min nTPM: 91.1
Sample A Female 125.5
Sample B Female 91.1
Sample C Male 112.1
Sample D Male 253.7
Midbrain
nTPM: 150.6
Samples: 4

Max nTPM: 266.0
Min nTPM: 80.6
Sample A Female 266.0
Sample B Female 159.6
Sample C Male 80.6
Sample D Male 96.0
Periaqueductal gray
nTPM: 110.6
Samples: 3

Max nTPM: 133.5
Min nTPM: 77.1
Sample B Female 133.5
Sample C Male 77.1
Sample D Male 121.2
Superior colliculi
nTPM: 111.1
Samples: 4

Max nTPM: 149.5
Min nTPM: 61.8
Sample A Female 113.9
Sample B Female 61.8
Sample C Male 119.0
Sample D Male 149.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.6
Samples: 4

Max nTPM: 88.4
Min nTPM: 83.3
Sample A Male 83.3
Sample B Male 86.7
Sample C Female 88.4
Sample D Female 83.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.6
68080699 Antisense, RP_040929_01_F07, Mouse strain C57BL/6J (56 days, male) 15.6

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