MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.1 nTPM
HPA Brain:58.0 nTPM
GTEx:38.1 nTPM
FANTOM5:23.0 Scaled Tags Per Million
Pig:98.6 nTPM
Mouse:59.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.3
1830 Male, age 51, unknown 48.6
1870 Female, age 42, unknown 46.5
2019 Male, age 18, unknown 45.9
2411 Female, age 72, unknown 45.1
2219 Male, age 76, both hemispheres 42.8
1833 Male, age 53, unknown 42.4
2666 Male, age 74, left hemisphere 42.3
2586 Male, age 75, left hemisphere 41.4
2828 Female, age 72, unknown 37.5
1827 Male, age 72, unknown 30.0
Dorsal raphe nucleus
nTPM: 43.2
2750 Male, age 76, both hemispheres 63.6
1828 Male, age 53, unknown 44.2
2047 Male, age 72, unknown 43.4
2298 Female, age 72, unknown 33.9
2016 Female, age 72, unknown 30.8
Inferior colliculus
nTPM: 42.4
1890 Male, age 53, unknown 50.4
2097 Female, age 72, unknown 43.5
1848 Female, age 42, unknown 41.9
2849 Male, age 72, unknown 33.8
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Periaquaductal grey, anterior
nTPM: 32.3
2502 Female, age 75, unknown 41.3
1947 Male, age 18, unknown 30.6
1795 Male, age 51, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 31.1
2464 Female, age 72, unknown 33.4
2850 Male, age 76, both hemispheres 31.5
1840 Male, age 53, unknown 31.2
1831 Male, age 72, unknown 28.1
Periaquaductal grey, lateral
nTPM: 31.6
2140 Male, age 76, both hemispheres 33.9
2272 Male, age 74, both hemispheres 32.8
2053 Male, age 18, unknown 28.2
Pretectal area
nTPM: 33.7
1817 Female, age 42, unknown 42.9
2007 Male, age 72, unknown 42.0
2667 Female, age 75, unknown 38.8
1815 Male, age 53, unknown 37.2
2316 Male, age 76, right hemisphere 35.2
1816 Male, age 51, unknown 34.0
1944 Female, age 72, unknown 31.7
2825 Male, age 18, unknown 31.2
2273 Male, age 74, both hemispheres 28.6
2224 Female, age 72, unknown 28.4
2407 Male, age 75, both hemispheres 20.1
Red nucleus
nTPM: 50.2
2823 Male, age 76, right hemisphere 62.5
1821 Female, age 72, unknown 60.0
2769 Male, age 72, unknown 59.1
2227 Male, age 72, unknown 57.7
1865 Male, age 51, unknown 57.3
2588 Male, age 74, left hemisphere 50.4
1954 Female, age 42, unknown 48.2
2785 Male, age 18, unknown 48.2
1904 Male, age 53, unknown 46.7
2584 Male, age 75, left hemisphere 39.1
2503 Female, age 72, unknown 37.7
2725 Female, age 75, unknown 35.3
Substantia nigra
nTPM: 44.1
2665 Male, age 74, both hemispheres 57.8
2699 Male, age 18, unknown 54.7
1916 Female, age 42, unknown 47.7
1851 Male, age 51, unknown 47.5
1889 Female, age 72, unknown 46.6
1941 Male, age 53, unknown 42.7
2241 Male, age 72, unknown 39.4
2409 Female, age 72, unknown 35.4
2590 Female, age 75, unknown 35.2
2583 Male, age 75, right hemisphere 33.8
Superior colliculus
nTPM: 36.9
1913 Female, age 42, unknown 49.2
1895 Male, age 76, right hemisphere 41.8
2587 Male, age 74, left hemisphere 41.1
1995 Male, age 72, unknown 41.0
2668 Female, age 75, unknown 40.7
2087 Female, age 72, unknown 37.9
1839 Male, age 51, unknown 33.6
2261 Male, age 18, unknown 32.7
1796 Male, age 53, unknown 28.7
2664 Male, age 75, both hemispheres 22.0
Ventral tegmental area
nTPM: 44.2
2223 Female, age 72, unknown 54.4
2218 Male, age 76, both hemispheres 47.8
2410 Female, age 72, unknown 45.7
2021 Male, age 53, unknown 40.6
1942 Male, age 51, unknown 39.2
1915 Female, age 42, unknown 37.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.1
Samples: 139

Max nTPM: 114.6
Min nTPM: 9.4
Std nTPM: 17.3
Median nTPM: 36.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 114.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 96.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 92.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 82.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 80.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 74.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 73.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 72.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 72.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 67.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.0
FF:10158-103A5 76 years, female 23.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.1
Samples: 4

Max nTPM: 102.1
Min nTPM: 81.3
Sample A Female 84.5
Sample B Female 81.3
Sample C Male 84.4
Sample D Male 102.1
Midbrain
nTPM: 85.4
Samples: 4

Max nTPM: 110.7
Min nTPM: 72.8
Sample A Female 110.7
Sample B Female 72.8
Sample C Male 84.0
Sample D Male 74.2
Periaqueductal gray
nTPM: 60.2
Samples: 3

Max nTPM: 81.5
Min nTPM: 43.1
Sample B Female 81.5
Sample C Male 56.1
Sample D Male 43.1
Superior colliculi
nTPM: 98.6
Samples: 4

Max nTPM: 115.4
Min nTPM: 80.9
Sample A Female 115.4
Sample B Female 108.0
Sample C Male 90.1
Sample D Male 80.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 54.2
Sample A Male 63.5
Sample B Male 54.2
Sample C Female 61.2
Sample D Female 59.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71763474 Antisense, RP_050921_02_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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