MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1458.1 nTPM
HPA Brain:462.2 nTPM
GTEx:1458.1 nTPM
FANTOM5:29.8 Scaled Tags Per Million
Pig:201.1 nTPM
Mouse:734.3 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 462.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 403.9
2666 Male, age 74, left hemisphere 452.5
2411 Female, age 72, unknown 446.2
1870 Female, age 42, unknown 419.9
1833 Male, age 53, unknown 413.3
2828 Female, age 72, unknown 408.8
2219 Male, age 76, both hemispheres 398.6
1830 Male, age 51, unknown 393.0
1827 Male, age 72, unknown 389.5
2586 Male, age 75, left hemisphere 381.8
2019 Male, age 18, unknown 335.0
Dorsal raphe nucleus
nTPM: 390.4
2750 Male, age 76, both hemispheres 444.5
2298 Female, age 72, unknown 417.4
2016 Female, age 72, unknown 377.7
1828 Male, age 53, unknown 372.4
2047 Male, age 72, unknown 340.0
Inferior colliculus
nTPM: 382.9
2849 Male, age 72, unknown 416.3
1890 Male, age 53, unknown 405.4
1848 Female, age 42, unknown 365.4
2097 Female, age 72, unknown 344.3
Median raphe nucleus
nTPM: 392.0
2220 Male, age 76, midline 392.0
Periaquaductal grey, anterior
nTPM: 384.6
2502 Female, age 75, unknown 429.6
1795 Male, age 51, unknown 371.1
1947 Male, age 18, unknown 353.1
Periaquaductal grey, dorsal
nTPM: 394.4
2850 Male, age 76, both hemispheres 418.4
1840 Male, age 53, unknown 407.8
2464 Female, age 72, unknown 385.4
1831 Male, age 72, unknown 365.8
Periaquaductal grey, lateral
nTPM: 375.6
2053 Male, age 18, unknown 420.2
2140 Male, age 76, both hemispheres 364.9
2272 Male, age 74, both hemispheres 341.6
Pretectal area
nTPM: 371.1
1817 Female, age 42, unknown 436.8
1815 Male, age 53, unknown 415.3
2316 Male, age 76, right hemisphere 415.2
2007 Male, age 72, unknown 399.5
2224 Female, age 72, unknown 385.6
2825 Male, age 18, unknown 380.5
1944 Female, age 72, unknown 371.4
1816 Male, age 51, unknown 354.1
2407 Male, age 75, both hemispheres 311.4
2667 Female, age 75, unknown 309.2
2273 Male, age 74, both hemispheres 302.5
Red nucleus
nTPM: 422.9
2503 Female, age 72, unknown 500.8
1821 Female, age 72, unknown 463.9
1865 Male, age 51, unknown 456.4
2725 Female, age 75, unknown 443.3
2588 Male, age 74, left hemisphere 427.2
1904 Male, age 53, unknown 425.9
2769 Male, age 72, unknown 416.4
2584 Male, age 75, left hemisphere 415.1
2227 Male, age 72, unknown 407.7
2785 Male, age 18, unknown 382.4
2823 Male, age 76, right hemisphere 382.3
1954 Female, age 42, unknown 353.5
Substantia nigra
nTPM: 462.2
2699 Male, age 18, unknown 637.4
2409 Female, age 72, unknown 576.2
1851 Male, age 51, unknown 564.1
2665 Male, age 74, both hemispheres 499.3
1916 Female, age 42, unknown 451.6
2241 Male, age 72, unknown 428.0
1889 Female, age 72, unknown 399.0
2590 Female, age 75, unknown 396.1
1941 Male, age 53, unknown 358.7
2583 Male, age 75, right hemisphere 312.0
Superior colliculus
nTPM: 411.9
1913 Female, age 42, unknown 487.4
2587 Male, age 74, left hemisphere 486.0
1995 Male, age 72, unknown 483.3
2668 Female, age 75, unknown 469.1
1796 Male, age 53, unknown 410.7
1839 Male, age 51, unknown 383.1
1895 Male, age 76, right hemisphere 366.9
2261 Male, age 18, unknown 357.4
2087 Female, age 72, unknown 344.7
2664 Male, age 75, both hemispheres 330.7
Ventral tegmental area
nTPM: 453.4
2410 Female, age 72, unknown 515.2
2223 Female, age 72, unknown 496.1
1915 Female, age 42, unknown 467.4
2021 Male, age 53, unknown 456.7
2218 Male, age 76, both hemispheres 395.1
1942 Male, age 51, unknown 389.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1458.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1458.1
Samples: 139

Max nTPM: 5375.5
Min nTPM: 478.7
Std nTPM: 624.4
Median nTPM: 1341.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5375.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3684.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3355.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3253.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2905.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2600.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2437.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2341.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2335.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2217.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2197.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.8
FF:10158-103A5 76 years, female 29.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 201.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 198.0
Samples: 4

Max nTPM: 256.6
Min nTPM: 156.5
Sample A Female 256.6
Sample B Female 199.9
Sample C Male 178.8
Sample D Male 156.5
Midbrain
nTPM: 192.0
Samples: 4

Max nTPM: 243.5
Min nTPM: 139.0
Sample A Female 243.5
Sample B Female 206.8
Sample C Male 178.8
Sample D Male 139.0
Periaqueductal gray
nTPM: 155.3
Samples: 3

Max nTPM: 168.8
Min nTPM: 135.3
Sample B Female 168.8
Sample C Male 161.8
Sample D Male 135.3
Superior colliculi
nTPM: 201.2
Samples: 4

Max nTPM: 239.5
Min nTPM: 159.6
Sample A Female 239.5
Sample B Female 210.8
Sample C Male 194.7
Sample D Male 159.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 734.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 734.3
Samples: 4

Max nTPM: 819.7
Min nTPM: 661.7
Sample A Male 819.7
Sample B Male 712.1
Sample C Female 661.7
Sample D Female 743.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
75934920 Antisense, RP_060530_01_E12, Mouse strain C57BL/6J (56 days, male) 7.1
69012729 Antisense, RP_050309_01_D03, Mouse strain C57BL/6J (56 days, male) 1.6

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