HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:50.7 nTPM
GTEx:13.3 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:28.3 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038400Antibody HPA038406
Glial cells LowLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Hippocampus
nTPM: 45.4
1898 Male, age 80, left hemisphere 52.0
2529 Female, age 94, left hemisphere 46.7
1855 Male, age 76, left hemisphere 46.3
2621 Female, age 67, right hemisphere 43.3
1911 Female, age 85, right hemisphere 43.1
2148 Female, age 91, left hemisphere 41.3
Dentate gyrus
nTPM: 44.5
1927 Female, age 91, both hemispheres 53.3
2010 Male, age 76, both hemispheres 50.6
2530 Female, age 94, left hemisphere 46.3
2528 Male, age 74, both hemispheres 39.4
2531 Female, age 67, both hemispheres 38.9
2246 Female, age 85, both hemispheres 38.3
Entorhinal gyrus
nTPM: 39.1
1938 Female, age 85, left hemisphere 43.7
2686 Male, age 75, right hemisphere 43.6
2117 Female, age 91, right hemisphere 37.7
1787 Male, age 76, left hemisphere 37.2
2764 Male, age 80, right hemisphere 36.7
2613 Female, age 94, left hemisphere 35.6
Hippocampus, CA1
nTPM: 50.7
2045 Male, age 76, both hemispheres 76.4
2749 Male, age 80, left hemisphere 51.0
1873 Female, age 85, both hemispheres 49.2
2527 Male, age 74, both hemispheres 39.2
2082 Female, age 91, right hemisphere 37.6
Hippocampus, CA2
nTPM: 46.9
1963 Male, age 80, left hemisphere 60.5
1892 Male, age 76, both hemispheres 59.3
2437 Female, age 94, left hemisphere 42.3
1940 Female, age 85, left hemisphere 41.4
2113 Female, age 91, right hemisphere 40.2
2249 Male, age 74, both hemispheres 37.4
Hippocampus, CA3
nTPM: 43.8
1867 Male, age 76, both hemispheres 56.7
2137 Male, age 80, left hemisphere 49.9
1891 Female, age 85, both hemispheres 46.8
2861 Female, age 67, both hemispheres 40.1
2620 Female, age 94, left hemisphere 38.1
2436 Male, age 74, both hemispheres 30.9
Parahippocampal cortex
nTPM: 40.8
1850 Male, age 80, both hemispheres 52.6
2018 Male, age 76, both hemispheres 45.5
2532 Female, age 72, left hemisphere 43.6
1933 Female, age 85, both hemispheres 42.1
2250 Female, age 67, right hemisphere 41.6
2693 Female, age 94, both hemispheres 40.4
1990 Female, age 91, right hemisphere 40.3
2245 Female, age 91, both hemispheres 39.6
2692 Male, age 74, both hemispheres 32.2
2622 Female, age 67, right hemisphere 30.3
Perirhinal gyrus
nTPM: 48.0
1841 Female, age 85, right hemisphere 54.7
1794 Male, age 80, right hemisphere 48.6
2848 Male, age 76, right hemisphere 48.2
1847 Female, age 91, left hemisphere 47.9
2521 Female, age 94, right hemisphere 40.5
Subiculum
nTPM: 42.5
1901 Male, age 80, both hemispheres 46.5
2438 Female, age 94, left hemisphere 46.5
1977 Female, age 85, both hemispheres 45.1
2042 Male, age 76, both hemispheres 41.6
2729 Female, age 91, right hemisphere 40.2
2619 Male, age 74, both hemispheres 35.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.3
Samples: 197

Max nTPM: 26.8
Min nTPM: 3.1
Std nTPM: 3.8
Median nTPM: 13.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 26.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 23.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 23.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 23.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 21.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 20.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 19.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 19.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 19.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 19.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 19.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.0
FF:10169-103B7 60 years, female 29.0
FF:10153-102I9 76 years, female 29.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Subiculum
nTPM: 41.3
Samples: 4

Max nTPM: 50.9
Min nTPM: 36.0
Sample A Female 50.9
Sample B Female 37.3
Sample C Male 36.0
Sample D Male 40.9
Dorsal hippocampus
nTPM: 49.4
Samples: 4

Max nTPM: 60.7
Min nTPM: 39.1
Sample A Female 60.7
Sample B Female 48.4
Sample C Male 49.2
Sample D Male 39.1
Entorhinal cortex
nTPM: 45.6
Samples: 4

Max nTPM: 57.3
Min nTPM: 38.0
Sample A Female 41.3
Sample B Female 57.3
Sample C Male 45.9
Sample D Male 38.0
Ventral hippocampus
nTPM: 41.4
Samples: 4

Max nTPM: 46.1
Min nTPM: 39.7
Sample A Female 40.0
Sample B Female 39.7
Sample C Male 39.7
Sample D Male 46.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.4
Samples: 4

Max nTPM: 19.5
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 16.7
Sample C Female 19.5
Sample D Female 17.6
Hippocampal formation
nTPM: 28.3
Samples: 4

Max nTPM: 34.0
Min nTPM: 24.4
Sample A Male 27.8
Sample B Male 24.4
Sample C Female 34.0
Sample D Female 27.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
532676 Antisense, RP_040825_01_C11, Mouse strain C57BL/6J (56 days, male) 6.7

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