MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:45.0 nTPM
GTEx:15.3 nTPM
FANTOM5:41.2 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:19.6 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.9
2411 Female, age 72, unknown 44.2
2219 Male, age 76, both hemispheres 42.3
2666 Male, age 74, left hemisphere 42.2
2019 Male, age 18, unknown 41.1
1827 Male, age 72, unknown 40.6
1833 Male, age 53, unknown 38.3
1870 Female, age 42, unknown 37.3
1830 Male, age 51, unknown 35.6
2828 Female, age 72, unknown 31.4
2586 Male, age 75, left hemisphere 26.4
Dorsal raphe nucleus
nTPM: 35.8
1828 Male, age 53, unknown 39.5
2750 Male, age 76, both hemispheres 37.7
2016 Female, age 72, unknown 35.3
2047 Male, age 72, unknown 34.6
2298 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 38.2
2097 Female, age 72, unknown 44.5
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 36.1
2849 Male, age 72, unknown 31.9
Median raphe nucleus
nTPM: 34.5
2220 Male, age 76, midline 34.5
Periaquaductal grey, anterior
nTPM: 37.5
2502 Female, age 75, unknown 47.7
1947 Male, age 18, unknown 34.4
1795 Male, age 51, unknown 30.3
Periaquaductal grey, dorsal
nTPM: 33.5
2464 Female, age 72, unknown 37.9
1831 Male, age 72, unknown 33.6
1840 Male, age 53, unknown 33.4
2850 Male, age 76, both hemispheres 29.2
Periaquaductal grey, lateral
nTPM: 31.0
2053 Male, age 18, unknown 35.6
2272 Male, age 74, both hemispheres 32.2
2140 Male, age 76, both hemispheres 25.2
Pretectal area
nTPM: 39.3
1816 Male, age 51, unknown 50.5
1815 Male, age 53, unknown 49.0
1944 Female, age 72, unknown 48.0
2007 Male, age 72, unknown 46.9
1817 Female, age 42, unknown 42.8
2224 Female, age 72, unknown 38.0
2316 Male, age 76, right hemisphere 34.5
2667 Female, age 75, unknown 33.4
2825 Male, age 18, unknown 32.7
2273 Male, age 74, both hemispheres 31.5
2407 Male, age 75, both hemispheres 24.6
Red nucleus
nTPM: 37.6
1821 Female, age 72, unknown 44.2
2503 Female, age 72, unknown 41.8
1954 Female, age 42, unknown 40.2
1865 Male, age 51, unknown 39.5
2785 Male, age 18, unknown 39.5
1904 Male, age 53, unknown 38.8
2725 Female, age 75, unknown 36.2
2823 Male, age 76, right hemisphere 36.2
2588 Male, age 74, left hemisphere 34.8
2584 Male, age 75, left hemisphere 33.9
2769 Male, age 72, unknown 33.9
2227 Male, age 72, unknown 31.9
Substantia nigra
nTPM: 45.0
2409 Female, age 72, unknown 52.6
2665 Male, age 74, both hemispheres 52.5
2241 Male, age 72, unknown 52.4
1889 Female, age 72, unknown 49.2
1916 Female, age 42, unknown 48.9
1851 Male, age 51, unknown 47.7
2699 Male, age 18, unknown 37.8
1941 Male, age 53, unknown 37.3
2583 Male, age 75, right hemisphere 37.1
2590 Female, age 75, unknown 34.5
Superior colliculus
nTPM: 39.6
2587 Male, age 74, left hemisphere 48.7
2668 Female, age 75, unknown 45.9
1895 Male, age 76, right hemisphere 45.1
2261 Male, age 18, unknown 42.9
2087 Female, age 72, unknown 40.5
1913 Female, age 42, unknown 39.8
1995 Male, age 72, unknown 39.1
1839 Male, age 51, unknown 36.7
1796 Male, age 53, unknown 34.6
2664 Male, age 75, both hemispheres 22.8
Ventral tegmental area
nTPM: 40.6
2410 Female, age 72, unknown 47.7
2223 Female, age 72, unknown 42.8
1915 Female, age 42, unknown 41.4
2218 Male, age 76, both hemispheres 40.7
1942 Male, age 51, unknown 36.5
2021 Male, age 53, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 31.8
Min nTPM: 6.0
Std nTPM: 4.8
Median nTPM: 15.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 24.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 22.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 22.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.2
FF:10158-103A5 76 years, female 41.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.3
Samples: 4

Max nTPM: 69.2
Min nTPM: 44.4
Sample A Female 69.2
Sample B Female 48.9
Sample C Male 50.5
Sample D Male 44.4
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 57.1
Min nTPM: 48.4
Sample A Female 48.4
Sample B Female 56.6
Sample C Male 57.1
Sample D Male 53.5
Periaqueductal gray
nTPM: 44.0
Samples: 3

Max nTPM: 45.6
Min nTPM: 41.4
Sample B Female 45.0
Sample C Male 45.6
Sample D Male 41.4
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 70.6
Min nTPM: 44.7
Sample A Female 68.6
Sample B Female 44.7
Sample C Male 70.6
Sample D Male 63.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.5
Sample A Male 21.3
Sample B Male 19.4
Sample C Female 20.1
Sample D Female 17.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
532676 Antisense, RP_040825_01_C11, Mouse strain C57BL/6J (56 days, male) 1.0

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