MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.1 nTPM
HPA Brain:439.2 nTPM
GTEx:126.1 nTPM
FANTOM5:801.7 Scaled Tags Per Million
Pig:311.9 nTPM
Mouse:146.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 439.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 378.2
1833 Male, age 53, unknown 440.5
1870 Female, age 42, unknown 431.5
2411 Female, age 72, unknown 427.2
1830 Male, age 51, unknown 405.7
2828 Female, age 72, unknown 387.3
2219 Male, age 76, both hemispheres 380.2
1827 Male, age 72, unknown 371.8
2666 Male, age 74, left hemisphere 359.6
2586 Male, age 75, left hemisphere 307.0
2019 Male, age 18, unknown 270.8
Dorsal raphe nucleus
nTPM: 380.1
2750 Male, age 76, both hemispheres 464.4
2047 Male, age 72, unknown 376.1
2016 Female, age 72, unknown 357.4
2298 Female, age 72, unknown 353.1
1828 Male, age 53, unknown 349.5
Inferior colliculus
nTPM: 335.7
2849 Male, age 72, unknown 407.8
1848 Female, age 42, unknown 369.8
1890 Male, age 53, unknown 293.8
2097 Female, age 72, unknown 271.4
Median raphe nucleus
nTPM: 439.2
2220 Male, age 76, midline 439.2
Periaquaductal grey, anterior
nTPM: 396.9
1947 Male, age 18, unknown 454.0
2502 Female, age 75, unknown 381.5
1795 Male, age 51, unknown 355.3
Periaquaductal grey, dorsal
nTPM: 339.3
1840 Male, age 53, unknown 346.0
2850 Male, age 76, both hemispheres 341.5
2464 Female, age 72, unknown 337.7
1831 Male, age 72, unknown 332.2
Periaquaductal grey, lateral
nTPM: 350.0
2053 Male, age 18, unknown 397.2
2272 Male, age 74, both hemispheres 326.7
2140 Male, age 76, both hemispheres 326.0
Pretectal area
nTPM: 371.7
2667 Female, age 75, unknown 510.4
2825 Male, age 18, unknown 423.2
2224 Female, age 72, unknown 401.8
2407 Male, age 75, both hemispheres 387.6
2316 Male, age 76, right hemisphere 386.6
1815 Male, age 53, unknown 360.0
2273 Male, age 74, both hemispheres 344.8
1944 Female, age 72, unknown 330.4
1817 Female, age 42, unknown 328.0
1816 Male, age 51, unknown 322.8
2007 Male, age 72, unknown 293.1
Red nucleus
nTPM: 412.6
1821 Female, age 72, unknown 473.5
2823 Male, age 76, right hemisphere 452.0
1904 Male, age 53, unknown 450.1
1865 Male, age 51, unknown 445.9
2503 Female, age 72, unknown 436.0
1954 Female, age 42, unknown 425.0
2769 Male, age 72, unknown 422.6
2227 Male, age 72, unknown 411.1
2588 Male, age 74, left hemisphere 387.8
2725 Female, age 75, unknown 385.0
2584 Male, age 75, left hemisphere 354.4
2785 Male, age 18, unknown 308.2
Substantia nigra
nTPM: 413.9
1916 Female, age 42, unknown 522.5
2699 Male, age 18, unknown 484.9
1851 Male, age 51, unknown 455.9
2241 Male, age 72, unknown 425.4
2409 Female, age 72, unknown 422.8
1941 Male, age 53, unknown 405.3
1889 Female, age 72, unknown 374.2
2590 Female, age 75, unknown 372.5
2583 Male, age 75, right hemisphere 369.8
2665 Male, age 74, both hemispheres 305.3
Superior colliculus
nTPM: 367.1
1895 Male, age 76, right hemisphere 423.7
1913 Female, age 42, unknown 419.1
1839 Male, age 51, unknown 386.6
2587 Male, age 74, left hemisphere 385.6
1796 Male, age 53, unknown 376.7
2261 Male, age 18, unknown 375.5
1995 Male, age 72, unknown 357.6
2668 Female, age 75, unknown 318.4
2087 Female, age 72, unknown 316.1
2664 Male, age 75, both hemispheres 311.5
Ventral tegmental area
nTPM: 415.3
2410 Female, age 72, unknown 446.7
1915 Female, age 42, unknown 437.2
2218 Male, age 76, both hemispheres 436.6
2223 Female, age 72, unknown 410.9
2021 Male, age 53, unknown 383.2
1942 Male, age 51, unknown 377.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.1
Samples: 139

Max nTPM: 340.2
Min nTPM: 59.9
Std nTPM: 40.6
Median nTPM: 117.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 340.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 272.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 262.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 254.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 241.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 232.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 209.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 199.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 195.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 187.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 179.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 801.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 801.7
FF:10158-103A5 76 years, female 801.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 311.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 311.9
Samples: 4

Max nTPM: 362.7
Min nTPM: 210.2
Sample A Female 322.3
Sample B Female 210.2
Sample C Male 352.5
Sample D Male 362.7
Midbrain
nTPM: 289.0
Samples: 4

Max nTPM: 317.8
Min nTPM: 271.9
Sample A Female 317.8
Sample B Female 271.9
Sample C Male 294.1
Sample D Male 272.2
Periaqueductal gray
nTPM: 254.3
Samples: 3

Max nTPM: 268.6
Min nTPM: 243.0
Sample B Female 251.3
Sample C Male 268.6
Sample D Male 243.0
Superior colliculi
nTPM: 254.6
Samples: 4

Max nTPM: 346.1
Min nTPM: 115.2
Sample A Female 280.7
Sample B Female 115.2
Sample C Male 276.5
Sample D Male 346.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 146.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 146.4
Samples: 4

Max nTPM: 160.7
Min nTPM: 132.2
Sample A Male 132.2
Sample B Male 142.7
Sample C Female 160.7
Sample D Female 150.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
80342134 Antisense, RP_071204_04_E02, Mouse strain C57BL/6J (56 days, male) 1.8

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