MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:220.8 nTPM
HPA Brain:223.1 nTPM
GTEx:220.8 nTPM
FANTOM5:541.4 Scaled Tags Per Million
Pig:126.8 nTPM
Mouse:89.0 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 223.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 186.7
1870 Female, age 42, unknown 225.5
1830 Male, age 51, unknown 210.8
1833 Male, age 53, unknown 202.6
2019 Male, age 18, unknown 194.8
2411 Female, age 72, unknown 188.7
2666 Male, age 74, left hemisphere 185.6
1827 Male, age 72, unknown 183.8
2828 Female, age 72, unknown 177.1
2219 Male, age 76, both hemispheres 150.0
2586 Male, age 75, left hemisphere 148.1
Dorsal raphe nucleus
nTPM: 166.5
2750 Male, age 76, both hemispheres 203.4
2016 Female, age 72, unknown 183.6
1828 Male, age 53, unknown 167.0
2047 Male, age 72, unknown 143.1
2298 Female, age 72, unknown 135.5
Inferior colliculus
nTPM: 183.0
2849 Male, age 72, unknown 202.6
1890 Male, age 53, unknown 181.6
1848 Female, age 42, unknown 177.2
2097 Female, age 72, unknown 170.6
Median raphe nucleus
nTPM: 183.1
2220 Male, age 76, midline 183.1
Periaquaductal grey, anterior
nTPM: 167.4
1947 Male, age 18, unknown 180.5
2502 Female, age 75, unknown 174.4
1795 Male, age 51, unknown 147.4
Periaquaductal grey, dorsal
nTPM: 175.9
2850 Male, age 76, both hemispheres 197.2
1831 Male, age 72, unknown 178.2
2464 Female, age 72, unknown 171.4
1840 Male, age 53, unknown 156.7
Periaquaductal grey, lateral
nTPM: 172.8
2053 Male, age 18, unknown 178.1
2140 Male, age 76, both hemispheres 177.3
2272 Male, age 74, both hemispheres 163.0
Pretectal area
nTPM: 179.5
1815 Male, age 53, unknown 201.3
2407 Male, age 75, both hemispheres 192.4
2316 Male, age 76, right hemisphere 188.5
1944 Female, age 72, unknown 182.4
2825 Male, age 18, unknown 181.9
2667 Female, age 75, unknown 180.9
1817 Female, age 42, unknown 176.5
1816 Male, age 51, unknown 172.6
2007 Male, age 72, unknown 171.4
2273 Male, age 74, both hemispheres 166.4
2224 Female, age 72, unknown 160.1
Red nucleus
nTPM: 223.1
1865 Male, age 51, unknown 258.0
2823 Male, age 76, right hemisphere 234.9
2503 Female, age 72, unknown 233.9
1904 Male, age 53, unknown 232.1
1821 Female, age 72, unknown 226.2
1954 Female, age 42, unknown 220.4
2725 Female, age 75, unknown 217.5
2769 Male, age 72, unknown 216.3
2227 Male, age 72, unknown 214.3
2588 Male, age 74, left hemisphere 210.8
2584 Male, age 75, left hemisphere 210.0
2785 Male, age 18, unknown 202.7
Substantia nigra
nTPM: 184.1
2409 Female, age 72, unknown 210.3
2583 Male, age 75, right hemisphere 206.1
2590 Female, age 75, unknown 203.7
1889 Female, age 72, unknown 185.4
2699 Male, age 18, unknown 182.0
2241 Male, age 72, unknown 181.4
1941 Male, age 53, unknown 175.0
2665 Male, age 74, both hemispheres 174.4
1851 Male, age 51, unknown 173.5
1916 Female, age 42, unknown 148.8
Superior colliculus
nTPM: 187.1
1913 Female, age 42, unknown 243.3
1995 Male, age 72, unknown 214.9
1895 Male, age 76, right hemisphere 198.1
2587 Male, age 74, left hemisphere 196.2
1839 Male, age 51, unknown 184.0
2087 Female, age 72, unknown 178.5
2261 Male, age 18, unknown 172.0
1796 Male, age 53, unknown 168.7
2668 Female, age 75, unknown 161.7
2664 Male, age 75, both hemispheres 153.0
Ventral tegmental area
nTPM: 176.6
2223 Female, age 72, unknown 194.9
2410 Female, age 72, unknown 186.8
2218 Male, age 76, both hemispheres 176.7
2021 Male, age 53, unknown 175.4
1942 Male, age 51, unknown 166.9
1915 Female, age 42, unknown 159.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 220.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 220.8
Samples: 139

Max nTPM: 461.5
Min nTPM: 99.0
Std nTPM: 61.7
Median nTPM: 214.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 461.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 457.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 376.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 369.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 367.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 363.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 352.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 330.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 327.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 322.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 317.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 541.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 541.4
FF:10158-103A5 76 years, female 541.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 111.1
Samples: 4

Max nTPM: 128.2
Min nTPM: 95.0
Sample A Female 106.5
Sample B Female 95.0
Sample C Male 114.7
Sample D Male 128.2
Midbrain
nTPM: 126.8
Samples: 4

Max nTPM: 166.9
Min nTPM: 108.4
Sample A Female 166.9
Sample B Female 120.2
Sample C Male 111.7
Sample D Male 108.4
Periaqueductal gray
nTPM: 111.2
Samples: 3

Max nTPM: 113.2
Min nTPM: 108.6
Sample B Female 108.6
Sample C Male 113.2
Sample D Male 111.7
Superior colliculi
nTPM: 109.9
Samples: 4

Max nTPM: 125.2
Min nTPM: 83.3
Sample A Female 109.6
Sample B Female 83.3
Sample C Male 125.2
Sample D Male 121.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.0
Samples: 4

Max nTPM: 101.2
Min nTPM: 79.9
Sample A Male 101.2
Sample B Male 87.9
Sample C Female 87.0
Sample D Female 79.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68445161 Antisense, RP_050111_02_H06, Mouse strain C57BL/6J (56 days, male) 4.5
572 Antisense, RP_Baylor_103185, Mouse strain C57BL/6J (56 days, male) 0.2
571 Antisense, RP_Baylor_103185, Mouse strain C57BL/6J (56 days, male) 0.0

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