HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:110.6 nTPM
HPA Brain:114.5 nTPM
GTEx:110.6 nTPM
FANTOM5:92.0 Scaled Tags Per Million
Pig:40.0 nTPM
Mouse:76.8 nTPM
Allen mouse:6.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021668Antibody HPA021759
Glial cells LowHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 114.5
Sample id Sample description nTPM
Hippocampus
nTPM: 101.2
2529 Female, age 94, left hemisphere 111.4
1911 Female, age 85, right hemisphere 102.6
2621 Female, age 67, right hemisphere 101.4
1898 Male, age 80, left hemisphere 98.9
1855 Male, age 76, left hemisphere 98.7
2148 Female, age 91, left hemisphere 94.4
Dentate gyrus
nTPM: 99.7
2530 Female, age 94, left hemisphere 163.1
2010 Male, age 76, both hemispheres 107.9
2531 Female, age 67, both hemispheres 94.3
2246 Female, age 85, both hemispheres 88.3
2528 Male, age 74, both hemispheres 75.9
1927 Female, age 91, both hemispheres 68.6
Entorhinal gyrus
nTPM: 106.9
2686 Male, age 75, right hemisphere 147.6
2117 Female, age 91, right hemisphere 142.8
2764 Male, age 80, right hemisphere 100.6
1938 Female, age 85, left hemisphere 90.2
2613 Female, age 94, left hemisphere 83.4
1787 Male, age 76, left hemisphere 77.1
Hippocampus, CA1
nTPM: 77.3
2082 Female, age 91, right hemisphere 87.9
1873 Female, age 85, both hemispheres 84.3
2527 Male, age 74, both hemispheres 82.2
2749 Male, age 80, left hemisphere 68.7
2045 Male, age 76, both hemispheres 63.5
Hippocampus, CA2
nTPM: 93.8
1963 Male, age 80, left hemisphere 123.5
2437 Female, age 94, left hemisphere 98.0
2113 Female, age 91, right hemisphere 97.3
1940 Female, age 85, left hemisphere 90.1
2249 Male, age 74, both hemispheres 81.6
1892 Male, age 76, both hemispheres 72.6
Hippocampus, CA3
nTPM: 76.3
1891 Female, age 85, both hemispheres 117.2
2861 Female, age 67, both hemispheres 84.3
1867 Male, age 76, both hemispheres 79.9
2137 Male, age 80, left hemisphere 61.7
2620 Female, age 94, left hemisphere 58.6
2436 Male, age 74, both hemispheres 56.0
Parahippocampal cortex
nTPM: 87.5
2692 Male, age 74, both hemispheres 115.5
2532 Female, age 72, left hemisphere 102.6
2018 Male, age 76, both hemispheres 94.3
1990 Female, age 91, right hemisphere 92.6
1850 Male, age 80, both hemispheres 90.5
2622 Female, age 67, right hemisphere 89.0
2245 Female, age 91, both hemispheres 87.8
1933 Female, age 85, both hemispheres 77.9
2693 Female, age 94, both hemispheres 64.1
2250 Female, age 67, right hemisphere 60.5
Perirhinal gyrus
nTPM: 67.3
2848 Male, age 76, right hemisphere 75.3
1794 Male, age 80, right hemisphere 70.6
1841 Female, age 85, right hemisphere 68.3
1847 Female, age 91, left hemisphere 67.3
2521 Female, age 94, right hemisphere 55.2
Subiculum
nTPM: 114.5
2042 Male, age 76, both hemispheres 147.7
2438 Female, age 94, left hemisphere 125.2
1901 Male, age 80, both hemispheres 123.9
1977 Female, age 85, both hemispheres 102.5
2729 Female, age 91, right hemisphere 98.6
2619 Male, age 74, both hemispheres 89.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 110.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 110.6
Samples: 197

Max nTPM: 374.7
Min nTPM: 21.6
Std nTPM: 61.5
Median nTPM: 93.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 374.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 351.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 340.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 293.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 289.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 287.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 278.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 254.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 246.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 228.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 227.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.0
FF:10153-102I9 76 years, female 122.7
FF:10169-103B7 60 years, female 61.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.0
Pig sample Sample description nTPM
Subiculum
nTPM: 34.6
Samples: 4

Max nTPM: 42.2
Min nTPM: 30.0
Sample A Female 42.2
Sample B Female 33.6
Sample C Male 30.0
Sample D Male 32.6
Dorsal hippocampus
nTPM: 40.0
Samples: 4

Max nTPM: 51.1
Min nTPM: 26.1
Sample A Female 51.1
Sample B Female 34.4
Sample C Male 48.4
Sample D Male 26.1
Entorhinal cortex
nTPM: 36.5
Samples: 4

Max nTPM: 40.1
Min nTPM: 34.1
Sample A Female 35.3
Sample B Female 40.1
Sample C Male 36.5
Sample D Male 34.1
Ventral hippocampus
nTPM: 34.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 26.5
Sample A Female 36.7
Sample B Female 26.5
Sample C Male 38.4
Sample D Male 37.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 76.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 76.9
Samples: 4

Max nTPM: 81.9
Min nTPM: 72.1
Sample A Male 81.9
Sample B Male 79.6
Sample C Female 73.8
Sample D Female 72.1
Hippocampal formation
nTPM: 76.4
Samples: 4

Max nTPM: 82.7
Min nTPM: 70.6
Sample A Male 76.5
Sample B Male 70.6
Sample C Female 82.7
Sample D Female 75.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.2
67764916 Antisense, RP_040916_02_C12, Mouse strain C57BL/6J (56 days, male) 11.1
70793941 Antisense, RP_050712_01_A09, Mouse strain C57BL/6J (56 days, male) 1.3

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