MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:167.7 nTPM
HPA Brain:227.7 nTPM
GTEx:167.7 nTPM
FANTOM5:188.9 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:100.5 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 227.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 182.3
2666 Male, age 74, left hemisphere 237.2
2586 Male, age 75, left hemisphere 216.8
1830 Male, age 51, unknown 196.2
1870 Female, age 42, unknown 188.4
2019 Male, age 18, unknown 185.3
1833 Male, age 53, unknown 183.8
2828 Female, age 72, unknown 176.9
2411 Female, age 72, unknown 175.4
1827 Male, age 72, unknown 145.9
2219 Male, age 76, both hemispheres 117.0
Dorsal raphe nucleus
nTPM: 135.8
2750 Male, age 76, both hemispheres 178.2
2016 Female, age 72, unknown 157.1
1828 Male, age 53, unknown 140.1
2047 Male, age 72, unknown 114.4
2298 Female, age 72, unknown 89.2
Inferior colliculus
nTPM: 129.8
1890 Male, age 53, unknown 145.1
2849 Male, age 72, unknown 134.5
1848 Female, age 42, unknown 129.2
2097 Female, age 72, unknown 110.5
Median raphe nucleus
nTPM: 112.3
2220 Male, age 76, midline 112.3
Periaquaductal grey, anterior
nTPM: 130.6
2502 Female, age 75, unknown 150.3
1947 Male, age 18, unknown 129.0
1795 Male, age 51, unknown 112.6
Periaquaductal grey, dorsal
nTPM: 116.9
2464 Female, age 72, unknown 138.1
1831 Male, age 72, unknown 121.5
2850 Male, age 76, both hemispheres 110.3
1840 Male, age 53, unknown 97.6
Periaquaductal grey, lateral
nTPM: 114.3
2053 Male, age 18, unknown 139.3
2140 Male, age 76, both hemispheres 110.4
2272 Male, age 74, both hemispheres 93.3
Pretectal area
nTPM: 126.1
1815 Male, age 53, unknown 167.1
2316 Male, age 76, right hemisphere 152.6
1817 Female, age 42, unknown 139.8
2007 Male, age 72, unknown 139.5
2407 Male, age 75, both hemispheres 136.8
2825 Male, age 18, unknown 132.3
1816 Male, age 51, unknown 117.2
1944 Female, age 72, unknown 107.9
2667 Female, age 75, unknown 106.1
2224 Female, age 72, unknown 101.1
2273 Male, age 74, both hemispheres 87.1
Red nucleus
nTPM: 227.7
2588 Male, age 74, left hemisphere 259.3
2503 Female, age 72, unknown 257.9
1865 Male, age 51, unknown 247.1
1904 Male, age 53, unknown 241.3
1821 Female, age 72, unknown 239.8
2823 Male, age 76, right hemisphere 236.8
2769 Male, age 72, unknown 229.8
2227 Male, age 72, unknown 229.2
2584 Male, age 75, left hemisphere 211.2
1954 Female, age 42, unknown 209.2
2785 Male, age 18, unknown 194.0
2725 Female, age 75, unknown 176.4
Substantia nigra
nTPM: 167.4
2665 Male, age 74, both hemispheres 202.4
2590 Female, age 75, unknown 188.2
1851 Male, age 51, unknown 180.2
2699 Male, age 18, unknown 180.1
2583 Male, age 75, right hemisphere 174.3
2409 Female, age 72, unknown 168.1
1889 Female, age 72, unknown 155.6
2241 Male, age 72, unknown 149.7
1941 Male, age 53, unknown 140.7
1916 Female, age 42, unknown 135.0
Superior colliculus
nTPM: 159.0
1995 Male, age 72, unknown 195.4
1913 Female, age 42, unknown 192.3
2587 Male, age 74, left hemisphere 179.3
2668 Female, age 75, unknown 179.0
2664 Male, age 75, both hemispheres 164.0
1839 Male, age 51, unknown 155.6
1895 Male, age 76, right hemisphere 151.5
1796 Male, age 53, unknown 129.5
2261 Male, age 18, unknown 124.7
2087 Female, age 72, unknown 118.5
Ventral tegmental area
nTPM: 150.2
2223 Female, age 72, unknown 176.9
2410 Female, age 72, unknown 169.9
2021 Male, age 53, unknown 144.3
1942 Male, age 51, unknown 141.3
1915 Female, age 42, unknown 139.2
2218 Male, age 76, both hemispheres 129.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 167.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.7
Samples: 139

Max nTPM: 391.5
Min nTPM: 49.2
Std nTPM: 77.7
Median nTPM: 145.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 391.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 369.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 368.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 366.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 343.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 337.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 326.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 321.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 317.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 308.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 304.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 188.9
FF:10158-103A5 76 years, female 188.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.1
Samples: 4

Max nTPM: 71.1
Min nTPM: 45.5
Sample A Female 63.0
Sample B Female 45.5
Sample C Male 52.7
Sample D Male 71.1
Midbrain
nTPM: 64.0
Samples: 4

Max nTPM: 102.1
Min nTPM: 44.8
Sample A Female 102.1
Sample B Female 58.0
Sample C Male 51.1
Sample D Male 44.8
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 50.8
Min nTPM: 43.5
Sample B Female 50.8
Sample C Male 44.3
Sample D Male 43.5
Superior colliculi
nTPM: 55.2
Samples: 4

Max nTPM: 61.0
Min nTPM: 40.6
Sample A Female 61.0
Sample B Female 40.6
Sample C Male 59.2
Sample D Male 59.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 100.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.5
Samples: 4

Max nTPM: 102.8
Min nTPM: 98.1
Sample A Male 102.8
Sample B Male 101.3
Sample C Female 99.6
Sample D Female 98.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
67764916 Antisense, RP_040916_02_C12, Mouse strain C57BL/6J (56 days, male) 4.7
70793941 Antisense, RP_050712_01_A09, Mouse strain C57BL/6J (56 days, male) 0.3

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