MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.6 nTPM
HPA Brain:223.6 nTPM
GTEx:64.6 nTPM
FANTOM5:78.7 Scaled Tags Per Million
Pig:441.0 nTPM
Mouse:829.2 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 223.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.2
2666 Male, age 74, left hemisphere 234.8
1827 Male, age 72, unknown 206.4
2219 Male, age 76, both hemispheres 183.8
2019 Male, age 18, unknown 172.4
2411 Female, age 72, unknown 171.8
1870 Female, age 42, unknown 164.9
2828 Female, age 72, unknown 157.6
2586 Male, age 75, left hemisphere 150.6
1833 Male, age 53, unknown 137.9
1830 Male, age 51, unknown 132.2
Dorsal raphe nucleus
nTPM: 157.5
2298 Female, age 72, unknown 198.0
2047 Male, age 72, unknown 167.4
1828 Male, age 53, unknown 160.2
2750 Male, age 76, both hemispheres 138.1
2016 Female, age 72, unknown 123.6
Inferior colliculus
nTPM: 223.6
2097 Female, age 72, unknown 267.3
1890 Male, age 53, unknown 211.9
1848 Female, age 42, unknown 211.6
2849 Male, age 72, unknown 203.3
Median raphe nucleus
nTPM: 180.7
2220 Male, age 76, midline 180.7
Periaquaductal grey, anterior
nTPM: 186.7
2502 Female, age 75, unknown 197.1
1795 Male, age 51, unknown 185.4
1947 Male, age 18, unknown 177.7
Periaquaductal grey, dorsal
nTPM: 182.5
1840 Male, age 53, unknown 220.6
2464 Female, age 72, unknown 173.2
1831 Male, age 72, unknown 168.7
2850 Male, age 76, both hemispheres 167.4
Periaquaductal grey, lateral
nTPM: 151.2
2053 Male, age 18, unknown 160.9
2140 Male, age 76, both hemispheres 150.7
2272 Male, age 74, both hemispheres 142.1
Pretectal area
nTPM: 212.1
1944 Female, age 72, unknown 298.4
1816 Male, age 51, unknown 282.1
1817 Female, age 42, unknown 280.4
2007 Male, age 72, unknown 270.4
1815 Male, age 53, unknown 227.7
2667 Female, age 75, unknown 206.5
2224 Female, age 72, unknown 197.5
2825 Male, age 18, unknown 149.9
2316 Male, age 76, right hemisphere 148.7
2273 Male, age 74, both hemispheres 139.9
2407 Male, age 75, both hemispheres 131.7
Red nucleus
nTPM: 134.3
2785 Male, age 18, unknown 179.7
2588 Male, age 74, left hemisphere 155.1
2725 Female, age 75, unknown 154.6
1821 Female, age 72, unknown 148.3
2503 Female, age 72, unknown 134.9
1954 Female, age 42, unknown 128.9
1865 Male, age 51, unknown 124.8
2227 Male, age 72, unknown 123.9
2769 Male, age 72, unknown 123.9
2584 Male, age 75, left hemisphere 114.6
2823 Male, age 76, right hemisphere 112.2
1904 Male, age 53, unknown 110.7
Substantia nigra
nTPM: 155.0
1889 Female, age 72, unknown 232.7
2665 Male, age 74, both hemispheres 194.9
1941 Male, age 53, unknown 174.1
1916 Female, age 42, unknown 159.8
2241 Male, age 72, unknown 154.7
1851 Male, age 51, unknown 145.5
2699 Male, age 18, unknown 127.9
2409 Female, age 72, unknown 122.8
2590 Female, age 75, unknown 122.0
2583 Male, age 75, right hemisphere 115.4
Superior colliculus
nTPM: 178.2
2087 Female, age 72, unknown 232.7
1895 Male, age 76, right hemisphere 208.9
1796 Male, age 53, unknown 202.8
2261 Male, age 18, unknown 200.8
1839 Male, age 51, unknown 175.6
2668 Female, age 75, unknown 174.3
2587 Male, age 74, left hemisphere 165.0
2664 Male, age 75, both hemispheres 148.5
1913 Female, age 42, unknown 141.0
1995 Male, age 72, unknown 132.2
Ventral tegmental area
nTPM: 147.5
2223 Female, age 72, unknown 156.6
2410 Female, age 72, unknown 155.6
2218 Male, age 76, both hemispheres 154.9
1942 Male, age 51, unknown 150.4
1915 Female, age 42, unknown 146.6
2021 Male, age 53, unknown 120.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.6
Samples: 139

Max nTPM: 206.4
Min nTPM: 10.6
Std nTPM: 34.7
Median nTPM: 59.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 206.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 199.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 180.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 170.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 136.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 124.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 122.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 121.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 117.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 117.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 116.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.7
FF:10158-103A5 76 years, female 78.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 441.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 378.5
Samples: 4

Max nTPM: 447.1
Min nTPM: 295.2
Sample A Female 437.7
Sample B Female 295.2
Sample C Male 447.1
Sample D Male 334.0
Midbrain
nTPM: 441.0
Samples: 4

Max nTPM: 554.6
Min nTPM: 395.8
Sample A Female 409.8
Sample B Female 395.8
Sample C Male 554.6
Sample D Male 403.9
Periaqueductal gray
nTPM: 427.4
Samples: 3

Max nTPM: 517.6
Min nTPM: 354.3
Sample B Female 410.2
Sample C Male 517.6
Sample D Male 354.3
Superior colliculi
nTPM: 399.8
Samples: 4

Max nTPM: 545.2
Min nTPM: 235.1
Sample A Female 415.8
Sample B Female 235.1
Sample C Male 545.2
Sample D Male 402.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 829.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 829.2
Samples: 4

Max nTPM: 855.2
Min nTPM: 808.5
Sample A Male 808.5
Sample B Male 823.2
Sample C Female 855.2
Sample D Female 830.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
72718 Antisense, RP_040407_01_H11, Mouse strain C57BL/6J (56 days, male) 17.7

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