MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:694.9 nTPM
HPA Brain:872.9 nTPM
GTEx:694.9 nTPM
FANTOM5:1185.4 Scaled Tags Per Million
Pig:504.4 nTPM
Mouse:505.0 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 872.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 727.4
2586 Male, age 75, left hemisphere 927.5
2828 Female, age 72, unknown 885.6
1833 Male, age 53, unknown 777.9
1870 Female, age 42, unknown 773.0
1830 Male, age 51, unknown 743.1
2411 Female, age 72, unknown 722.3
2666 Male, age 74, left hemisphere 710.8
2019 Male, age 18, unknown 672.9
1827 Male, age 72, unknown 637.4
2219 Male, age 76, both hemispheres 423.3
Dorsal raphe nucleus
nTPM: 588.0
2016 Female, age 72, unknown 728.9
1828 Male, age 53, unknown 648.5
2750 Male, age 76, both hemispheres 574.8
2047 Male, age 72, unknown 511.1
2298 Female, age 72, unknown 476.9
Inferior colliculus
nTPM: 679.5
2849 Male, age 72, unknown 779.4
1848 Female, age 42, unknown 728.9
1890 Male, age 53, unknown 617.7
2097 Female, age 72, unknown 592.1
Median raphe nucleus
nTPM: 366.2
2220 Male, age 76, midline 366.2
Periaquaductal grey, anterior
nTPM: 606.6
2502 Female, age 75, unknown 777.6
1947 Male, age 18, unknown 567.8
1795 Male, age 51, unknown 474.4
Periaquaductal grey, dorsal
nTPM: 626.9
2464 Female, age 72, unknown 729.3
1840 Male, age 53, unknown 651.0
2850 Male, age 76, both hemispheres 607.6
1831 Male, age 72, unknown 519.7
Periaquaductal grey, lateral
nTPM: 578.9
2053 Male, age 18, unknown 692.0
2140 Male, age 76, both hemispheres 646.1
2272 Male, age 74, both hemispheres 398.5
Pretectal area
nTPM: 587.5
2316 Male, age 76, right hemisphere 731.6
1815 Male, age 53, unknown 694.5
2667 Female, age 75, unknown 669.7
1817 Female, age 42, unknown 639.3
2407 Male, age 75, both hemispheres 628.0
2825 Male, age 18, unknown 624.1
1944 Female, age 72, unknown 549.7
2007 Male, age 72, unknown 518.6
2273 Male, age 74, both hemispheres 484.1
1816 Male, age 51, unknown 483.7
2224 Female, age 72, unknown 439.3
Red nucleus
nTPM: 872.9
1821 Female, age 72, unknown 1045.4
1865 Male, age 51, unknown 1005.7
2769 Male, age 72, unknown 980.0
1904 Male, age 53, unknown 966.0
1954 Female, age 42, unknown 936.6
2503 Female, age 72, unknown 924.4
2227 Male, age 72, unknown 922.0
2823 Male, age 76, right hemisphere 854.2
2588 Male, age 74, left hemisphere 853.3
2785 Male, age 18, unknown 749.5
2725 Female, age 75, unknown 649.6
2584 Male, age 75, left hemisphere 588.7
Substantia nigra
nTPM: 617.1
2699 Male, age 18, unknown 810.4
1851 Male, age 51, unknown 729.9
2409 Female, age 72, unknown 679.2
1889 Female, age 72, unknown 625.1
2583 Male, age 75, right hemisphere 622.4
1916 Female, age 42, unknown 590.8
2590 Female, age 75, unknown 569.8
2241 Male, age 72, unknown 552.5
2665 Male, age 74, both hemispheres 512.6
1941 Male, age 53, unknown 478.1
Superior colliculus
nTPM: 721.5
1995 Male, age 72, unknown 945.9
2664 Male, age 75, both hemispheres 925.9
1913 Female, age 42, unknown 847.1
1839 Male, age 51, unknown 756.4
1895 Male, age 76, right hemisphere 717.3
2587 Male, age 74, left hemisphere 690.9
2668 Female, age 75, unknown 664.2
1796 Male, age 53, unknown 611.3
2087 Female, age 72, unknown 543.0
2261 Male, age 18, unknown 512.9
Ventral tegmental area
nTPM: 573.3
2410 Female, age 72, unknown 810.4
1915 Female, age 42, unknown 605.2
1942 Male, age 51, unknown 542.9
2021 Male, age 53, unknown 531.1
2223 Female, age 72, unknown 508.6
2218 Male, age 76, both hemispheres 441.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 694.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 694.9
Samples: 139

Max nTPM: 1289.0
Min nTPM: 217.9
Std nTPM: 210.3
Median nTPM: 658.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1289.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1198.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1194.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1190.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1158.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1149.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1118.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1088.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1070.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1069.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1058.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1185.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1185.4
FF:10158-103A5 76 years, female 1185.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 504.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 504.4
Samples: 4

Max nTPM: 590.2
Min nTPM: 408.7
Sample A Female 481.5
Sample B Female 537.0
Sample C Male 408.7
Sample D Male 590.2
Midbrain
nTPM: 486.1
Samples: 4

Max nTPM: 723.3
Min nTPM: 279.0
Sample A Female 723.3
Sample B Female 632.6
Sample C Male 309.5
Sample D Male 279.0
Periaqueductal gray
nTPM: 417.6
Samples: 3

Max nTPM: 522.6
Min nTPM: 356.1
Sample B Female 522.6
Sample C Male 374.1
Sample D Male 356.1
Superior colliculi
nTPM: 435.4
Samples: 4

Max nTPM: 493.3
Min nTPM: 351.4
Sample A Female 493.3
Sample B Female 351.4
Sample C Male 422.4
Sample D Male 474.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 505.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 505.0
Samples: 4

Max nTPM: 542.1
Min nTPM: 478.3
Sample A Male 542.1
Sample B Male 485.7
Sample C Female 478.3
Sample D Female 514.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
2130 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 6.1
2129 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 6.0
68269598 Antisense, RP_041129_01_H05, Mouse strain C57BL/6J (56 days, male) 4.0

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