MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.0 nTPM
HPA Brain:178.1 nTPM
GTEx:74.0 nTPM
FANTOM5:220.0 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:72.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 178.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.8
1870 Female, age 42, unknown 118.6
2411 Female, age 72, unknown 117.0
2666 Male, age 74, left hemisphere 105.2
1833 Male, age 53, unknown 103.2
1830 Male, age 51, unknown 101.8
2586 Male, age 75, left hemisphere 95.0
1827 Male, age 72, unknown 92.8
2219 Male, age 76, both hemispheres 92.8
2828 Female, age 72, unknown 91.3
2019 Male, age 18, unknown 70.1
Dorsal raphe nucleus
nTPM: 127.3
2750 Male, age 76, both hemispheres 154.1
2047 Male, age 72, unknown 146.7
2298 Female, age 72, unknown 123.0
1828 Male, age 53, unknown 107.2
2016 Female, age 72, unknown 105.5
Inferior colliculus
nTPM: 81.9
2849 Male, age 72, unknown 90.2
1848 Female, age 42, unknown 82.4
1890 Male, age 53, unknown 81.7
2097 Female, age 72, unknown 73.2
Median raphe nucleus
nTPM: 178.1
2220 Male, age 76, midline 178.1
Periaquaductal grey, anterior
nTPM: 93.8
1795 Male, age 51, unknown 101.5
1947 Male, age 18, unknown 98.3
2502 Female, age 75, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 100.5
1840 Male, age 53, unknown 114.1
2850 Male, age 76, both hemispheres 106.6
2464 Female, age 72, unknown 91.4
1831 Male, age 72, unknown 89.8
Periaquaductal grey, lateral
nTPM: 93.0
2053 Male, age 18, unknown 104.6
2140 Male, age 76, both hemispheres 93.1
2272 Male, age 74, both hemispheres 81.3
Pretectal area
nTPM: 84.5
2825 Male, age 18, unknown 123.0
2224 Female, age 72, unknown 112.9
2273 Male, age 74, both hemispheres 91.7
2407 Male, age 75, both hemispheres 91.0
2316 Male, age 76, right hemisphere 82.5
2007 Male, age 72, unknown 76.1
1815 Male, age 53, unknown 73.6
1817 Female, age 42, unknown 72.8
1944 Female, age 72, unknown 70.8
2667 Female, age 75, unknown 67.8
1816 Male, age 51, unknown 67.3
Red nucleus
nTPM: 94.7
2588 Male, age 74, left hemisphere 110.0
2584 Male, age 75, left hemisphere 102.1
2503 Female, age 72, unknown 99.2
2769 Male, age 72, unknown 98.0
2725 Female, age 75, unknown 96.0
1821 Female, age 72, unknown 95.5
2227 Male, age 72, unknown 95.4
2823 Male, age 76, right hemisphere 93.4
1904 Male, age 53, unknown 91.3
1865 Male, age 51, unknown 90.6
1954 Female, age 42, unknown 87.6
2785 Male, age 18, unknown 76.9
Substantia nigra
nTPM: 100.7
2590 Female, age 75, unknown 111.3
1941 Male, age 53, unknown 108.3
2699 Male, age 18, unknown 104.7
1851 Male, age 51, unknown 102.8
2241 Male, age 72, unknown 102.6
2665 Male, age 74, both hemispheres 100.1
2583 Male, age 75, right hemisphere 100.0
1916 Female, age 42, unknown 97.6
2409 Female, age 72, unknown 92.5
1889 Female, age 72, unknown 87.1
Superior colliculus
nTPM: 86.5
2668 Female, age 75, unknown 106.4
2587 Male, age 74, left hemisphere 95.4
2664 Male, age 75, both hemispheres 93.9
1839 Male, age 51, unknown 92.7
1913 Female, age 42, unknown 87.2
1895 Male, age 76, right hemisphere 83.8
1796 Male, age 53, unknown 81.6
2261 Male, age 18, unknown 79.8
1995 Male, age 72, unknown 79.3
2087 Female, age 72, unknown 65.3
Ventral tegmental area
nTPM: 113.5
2021 Male, age 53, unknown 125.1
2223 Female, age 72, unknown 121.0
1942 Male, age 51, unknown 116.2
1915 Female, age 42, unknown 109.1
2218 Male, age 76, both hemispheres 108.8
2410 Female, age 72, unknown 101.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.0
Samples: 139

Max nTPM: 120.1
Min nTPM: 45.4
Std nTPM: 13.7
Median nTPM: 72.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 120.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 102.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 102.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 101.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 101.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 100.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 100.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 96.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 94.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 220.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.0
FF:10158-103A5 76 years, female 220.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 38.8
Min nTPM: 21.0
Sample A Female 38.8
Sample B Female 23.9
Sample C Male 33.7
Sample D Male 21.0
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 32.7
Min nTPM: 23.4
Sample A Female 32.7
Sample B Female 26.6
Sample C Male 27.6
Sample D Male 23.4
Periaqueductal gray
nTPM: 26.6
Samples: 3

Max nTPM: 30.7
Min nTPM: 22.9
Sample B Female 26.1
Sample C Male 30.7
Sample D Male 22.9
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 21.4
Sample A Female 26.3
Sample B Female 21.4
Sample C Male 24.0
Sample D Male 24.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 75.8
Min nTPM: 64.6
Sample A Male 74.6
Sample B Male 73.8
Sample C Female 64.6
Sample D Female 75.8

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