BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:25.1 nTPM
HPA Brain:44.2 nTPM
GTEx:25.1 nTPM
FANTOM5:138.8 Scaled Tags Per Million
Pig:59.0 nTPM
Mouse:92.3 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044837
Glial cells Medium
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.9
1857 Female, age 85, left hemisphere 44.2
2846 Female, age 79, unknown 43.3
2288 Male, age 75, left hemisphere 42.3
1854 Male, age 80, left hemisphere 40.5
2290 Female, age 72, unknown 40.0
1781 Male, age 74, unknown 38.8
2481 Female, age 94, left hemisphere 35.2
2289 Male, age 61, right hemisphere 34.9
Globus pallidus, externus
nTPM: 41.2
2772 Female, age 79, unknown 47.3
2395 Male, age 75, both hemispheres 43.5
1996 Male, age 80, right hemisphere 42.0
2646 Male, age 61, right hemisphere 40.0
2567 Female, age 72, unknown 33.4
Globus pallidus, internus
nTPM: 42.8
2287 Male, age 75, right hemisphere 46.7
2483 Female, age 94, right hemisphere 45.3
2778 Female, age 91, both hemispheres 44.0
1818 Male, age 74, unknown 43.5
2037 Male, age 80, right hemisphere 42.5
2566 Female, age 72, unknown 38.9
2111 Female, age 85, right hemisphere 38.5
Nucleus accumbens
nTPM: 40.8
1856 Female, age 91, right hemisphere 46.5
2824 Male, age 61, right hemisphere 43.9
2698 Female, age 72, unknown 43.5
1806 Female, age 85, left hemisphere 40.4
1783 Male, age 74, unknown 39.5
2286 Male, age 75, left hemisphere 39.3
2391 Female, age 94, left hemisphere 37.4
2732 Male, age 80, right hemisphere 36.2
Nucleus basalis of Meynert
nTPM: 39.3
2569 Male, age 61, both hemispheres 46.3
2393 Male, age 80, right hemisphere 38.7
2484 Female, age 94, left hemisphere 36.7
2821 Male, age 75, both hemispheres 35.6
Nucleus of the diagonal band
nTPM: 44.2
2029 Male, age 61, right hemisphere 48.2
1812 Female, age 91, both hemispheres 46.0
2195 Female, age 85, both hemispheres 45.9
2775 Male, age 80, right hemisphere 44.5
1979 Male, age 74, unknown 36.3
Putamen
nTPM: 38.5
1937 Female, age 91, right hemisphere 42.3
1838 Male, age 80, right hemisphere 40.1
2647 Male, age 75, left hemisphere 40.0
2482 Female, age 94, left hemisphere 38.6
2466 Female, age 79, unknown 38.2
2489 Female, age 72, unknown 36.0
1829 Male, age 74, unknown 34.2
Septal nuclei
nTPM: 43.7
2031 Female, age 72, unknown 52.5
1960 Male, age 74, unknown 47.8
2629 Female, age 94, right hemisphere 43.8
2394 Male, age 61, left hemisphere 42.7
2059 Female, age 85, both hemispheres 40.7
2009 Female, age 91, both hemispheres 39.3
2199 Male, age 80, right hemisphere 39.3
Stria terminalis, bed nucleus
nTPM: 41.1
1974 Female, age 91, both hemispheres 46.2
2486 Female, age 94, both hemispheres 38.8
2201 Male, age 74, unknown 38.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.1
Samples: 246

Max nTPM: 37.6
Min nTPM: 11.1
Std nTPM: 4.8
Median nTPM: 21.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 37.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 36.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 36.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 34.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 34.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 34.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 34.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 33.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 32.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 32.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 55.6
Min nTPM: 6.7
Std nTPM: 6.4
Median nTPM: 24.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 55.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 50.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 44.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 40.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 40.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 40.5
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 40.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 38.5
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 36.6
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 36.1
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 35.4
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Brain - Putamen (basal ganglia)
Average nTPM: 22.5
Samples: 205

Max nTPM: 50.1
Min nTPM: 10.8
Std nTPM: 5.1
Median nTPM: 22.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 50.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 48.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 41.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 33.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 33.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 31.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 30.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 30.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 29.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 29.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 29.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.0
FF:10164-103B2 76 years, female 78.0
Nucleus accumbens
Scaled Tags Per Million: 138.8
FF:10037-101F1 23-56 years, mixed 138.8
Putamen
Scaled Tags Per Million: 99.3
FF:10176-103C5 60 years, female 99.3
Globus pallidus
Scaled Tags Per Million: 51.6
FF:10175-103C4 60 years, female 51.7
FF:10161-103A8 76 years, female 51.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.0
Pig sample Sample description nTPM
Caudate
nTPM: 51.0
Samples: 4

Max nTPM: 56.8
Min nTPM: 47.0
Sample A Female 47.0
Sample B Female 51.3
Sample C Male 56.8
Sample D Male 48.8
Putamen
nTPM: 59.1
Samples: 4

Max nTPM: 65.9
Min nTPM: 50.8
Sample A Female 59.9
Sample B Female 50.8
Sample C Male 65.9
Sample D Male 59.6
Septum
nTPM: 51.0
Samples: 4

Max nTPM: 53.2
Min nTPM: 49.2
Sample A Female 50.9
Sample B Female 50.6
Sample C Male 53.2
Sample D Male 49.2
Ventral pallidum
nTPM: 53.9
Samples: 4

Max nTPM: 60.8
Min nTPM: 45.3
Sample A Female 45.3
Sample B Female 55.1
Sample C Male 60.8
Sample D Male 54.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 92.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 92.3
Samples: 4

Max nTPM: 97.4
Min nTPM: 86.4
Sample A Male 92.7
Sample B Male 86.4
Sample C Female 92.5
Sample D Female 97.4
Septum
nTPM: 84.6
Samples: 4

Max nTPM: 88.2
Min nTPM: 80.6
Sample A Male 80.6
Sample B Male 88.2
Sample C Female 88.2
Sample D Female 81.3
Ventral forebrain
nTPM: 91.7
Samples: 4

Max nTPM: 96.0
Min nTPM: 87.1
Sample A Male 87.1
Sample B Male 92.3
Sample C Female 96.0
Sample D Female 91.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
671224 Antisense, RP_040914_01_G10, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.5
671224 Antisense, RP_040914_01_G10, Mouse strain C57BL/6J (56 days, male) 0.5

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