MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:48.1 nTPM
GTEx:24.5 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:66.3 nTPM
Mouse:94.5 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2586 Male, age 75, left hemisphere 51.1
2411 Female, age 72, unknown 48.0
1870 Female, age 42, unknown 44.2
2019 Male, age 18, unknown 44.0
1827 Male, age 72, unknown 42.9
1833 Male, age 53, unknown 42.0
2828 Female, age 72, unknown 41.8
1830 Male, age 51, unknown 40.3
2666 Male, age 74, left hemisphere 37.0
2219 Male, age 76, both hemispheres 36.5
Dorsal raphe nucleus
nTPM: 43.2
2298 Female, age 72, unknown 47.1
2750 Male, age 76, both hemispheres 44.1
1828 Male, age 53, unknown 43.5
2047 Male, age 72, unknown 41.2
2016 Female, age 72, unknown 40.1
Inferior colliculus
nTPM: 42.3
2097 Female, age 72, unknown 44.2
1890 Male, age 53, unknown 43.2
2849 Male, age 72, unknown 41.6
1848 Female, age 42, unknown 40.4
Median raphe nucleus
nTPM: 48.1
2220 Male, age 76, midline 48.1
Periaquaductal grey, anterior
nTPM: 39.6
2502 Female, age 75, unknown 42.0
1947 Male, age 18, unknown 38.9
1795 Male, age 51, unknown 38.0
Periaquaductal grey, dorsal
nTPM: 43.9
2850 Male, age 76, both hemispheres 45.2
1840 Male, age 53, unknown 44.5
2464 Female, age 72, unknown 44.1
1831 Male, age 72, unknown 42.0
Periaquaductal grey, lateral
nTPM: 41.0
2140 Male, age 76, both hemispheres 42.6
2053 Male, age 18, unknown 42.1
2272 Male, age 74, both hemispheres 38.4
Pretectal area
nTPM: 43.4
1815 Male, age 53, unknown 48.8
1944 Female, age 72, unknown 46.7
1816 Male, age 51, unknown 46.6
2007 Male, age 72, unknown 44.9
2667 Female, age 75, unknown 44.4
2825 Male, age 18, unknown 42.7
1817 Female, age 42, unknown 42.6
2224 Female, age 72, unknown 42.6
2407 Male, age 75, both hemispheres 41.4
2273 Male, age 74, both hemispheres 40.7
2316 Male, age 76, right hemisphere 36.3
Red nucleus
nTPM: 40.8
1821 Female, age 72, unknown 45.6
2588 Male, age 74, left hemisphere 42.8
2785 Male, age 18, unknown 42.5
1954 Female, age 42, unknown 41.8
2769 Male, age 72, unknown 40.9
1865 Male, age 51, unknown 40.6
2584 Male, age 75, left hemisphere 40.2
2823 Male, age 76, right hemisphere 40.2
1904 Male, age 53, unknown 39.6
2503 Female, age 72, unknown 39.0
2725 Female, age 75, unknown 38.4
2227 Male, age 72, unknown 38.0
Substantia nigra
nTPM: 45.5
2241 Male, age 72, unknown 56.9
1889 Female, age 72, unknown 49.4
1916 Female, age 42, unknown 48.7
1851 Male, age 51, unknown 46.0
1941 Male, age 53, unknown 45.7
2583 Male, age 75, right hemisphere 44.0
2590 Female, age 75, unknown 42.3
2699 Male, age 18, unknown 42.1
2409 Female, age 72, unknown 41.0
2665 Male, age 74, both hemispheres 39.1
Superior colliculus
nTPM: 41.7
2664 Male, age 75, both hemispheres 48.7
2668 Female, age 75, unknown 43.4
2587 Male, age 74, left hemisphere 43.0
2087 Female, age 72, unknown 42.4
2261 Male, age 18, unknown 41.7
1839 Male, age 51, unknown 41.5
1895 Male, age 76, right hemisphere 40.6
1913 Female, age 42, unknown 39.7
1796 Male, age 53, unknown 38.2
1995 Male, age 72, unknown 37.6
Ventral tegmental area
nTPM: 44.1
2410 Female, age 72, unknown 46.2
1942 Male, age 51, unknown 44.7
1915 Female, age 42, unknown 44.0
2223 Female, age 72, unknown 43.9
2218 Male, age 76, both hemispheres 43.7
2021 Male, age 53, unknown 42.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.5
Samples: 139

Max nTPM: 72.9
Min nTPM: 8.2
Std nTPM: 7.3
Median nTPM: 23.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 44.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 42.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 35.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 34.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.9
FF:10158-103A5 76 years, female 54.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.7
Samples: 4

Max nTPM: 72.1
Min nTPM: 56.4
Sample A Female 72.1
Sample B Female 56.4
Sample C Male 66.6
Sample D Male 63.5
Midbrain
nTPM: 66.3
Samples: 4

Max nTPM: 81.4
Min nTPM: 53.5
Sample A Female 81.4
Sample B Female 63.3
Sample C Male 66.9
Sample D Male 53.5
Periaqueductal gray
nTPM: 54.2
Samples: 3

Max nTPM: 56.7
Min nTPM: 49.2
Sample B Female 56.7
Sample C Male 56.6
Sample D Male 49.2
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 65.4
Min nTPM: 52.5
Sample A Female 65.4
Sample B Female 52.5
Sample C Male 64.9
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.5
Samples: 4

Max nTPM: 102.6
Min nTPM: 90.1
Sample A Male 92.8
Sample B Male 90.1
Sample C Female 92.3
Sample D Female 102.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
671224 Antisense, RP_040914_01_G10, Mouse strain C57BL/6J (56 days, male) 1.7

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