HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:20.8 nTPM
HPA Brain:42.3 nTPM
GTEx:20.8 nTPM
FANTOM5:68.1 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:95.3 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044837
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Hippocampus
nTPM: 41.0
1855 Male, age 76, left hemisphere 45.6
1898 Male, age 80, left hemisphere 43.6
2529 Female, age 94, left hemisphere 41.0
2148 Female, age 91, left hemisphere 40.5
2621 Female, age 67, right hemisphere 39.1
1911 Female, age 85, right hemisphere 36.0
Dentate gyrus
nTPM: 39.0
2010 Male, age 76, both hemispheres 42.4
2528 Male, age 74, both hemispheres 39.8
1927 Female, age 91, both hemispheres 38.7
2246 Female, age 85, both hemispheres 37.8
2530 Female, age 94, left hemisphere 37.8
2531 Female, age 67, both hemispheres 37.5
Entorhinal gyrus
nTPM: 39.1
2117 Female, age 91, right hemisphere 41.4
1938 Female, age 85, left hemisphere 41.3
1787 Male, age 76, left hemisphere 40.4
2764 Male, age 80, right hemisphere 40.1
2613 Female, age 94, left hemisphere 38.8
2686 Male, age 75, right hemisphere 32.7
Hippocampus, CA1
nTPM: 39.2
1873 Female, age 85, both hemispheres 42.1
2749 Male, age 80, left hemisphere 41.0
2045 Male, age 76, both hemispheres 38.6
2527 Male, age 74, both hemispheres 38.1
2082 Female, age 91, right hemisphere 36.3
Hippocampus, CA2
nTPM: 38.9
1892 Male, age 76, both hemispheres 44.2
1963 Male, age 80, left hemisphere 41.6
2249 Male, age 74, both hemispheres 41.4
2113 Female, age 91, right hemisphere 39.1
2437 Female, age 94, left hemisphere 34.9
1940 Female, age 85, left hemisphere 32.5
Hippocampus, CA3
nTPM: 38.1
1891 Female, age 85, both hemispheres 41.4
2620 Female, age 94, left hemisphere 38.5
2436 Male, age 74, both hemispheres 37.5
2861 Female, age 67, both hemispheres 37.4
2137 Male, age 80, left hemisphere 37.1
1867 Male, age 76, both hemispheres 36.5
Parahippocampal cortex
nTPM: 40.3
2693 Female, age 94, both hemispheres 43.2
1850 Male, age 80, both hemispheres 42.6
1933 Female, age 85, both hemispheres 41.6
2532 Female, age 72, left hemisphere 41.5
2692 Male, age 74, both hemispheres 40.3
2622 Female, age 67, right hemisphere 40.2
1990 Female, age 91, right hemisphere 39.5
2245 Female, age 91, both hemispheres 38.8
2250 Female, age 67, right hemisphere 37.8
2018 Male, age 76, both hemispheres 37.2
Perirhinal gyrus
nTPM: 42.3
1847 Female, age 91, left hemisphere 47.1
1841 Female, age 85, right hemisphere 44.8
1794 Male, age 80, right hemisphere 42.0
2521 Female, age 94, right hemisphere 39.1
2848 Male, age 76, right hemisphere 38.7
Subiculum
nTPM: 39.3
2619 Male, age 74, both hemispheres 43.9
1977 Female, age 85, both hemispheres 42.2
2438 Female, age 94, left hemisphere 38.7
2042 Male, age 76, both hemispheres 38.0
2729 Female, age 91, right hemisphere 37.8
1901 Male, age 80, both hemispheres 35.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.8
Samples: 197

Max nTPM: 35.6
Min nTPM: 6.0
Std nTPM: 4.9
Median nTPM: 20.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 35.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 35.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 34.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 32.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 31.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 31.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 31.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 30.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 30.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 29.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 29.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.1
FF:10169-103B7 60 years, female 74.7
FF:10153-102I9 76 years, female 61.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.9
Pig sample Sample description nTPM
Subiculum
nTPM: 52.2
Samples: 4

Max nTPM: 62.2
Min nTPM: 47.7
Sample A Female 62.2
Sample B Female 51.0
Sample C Male 47.9
Sample D Male 47.7
Dorsal hippocampus
nTPM: 54.9
Samples: 4

Max nTPM: 61.1
Min nTPM: 47.6
Sample A Female 61.1
Sample B Female 56.0
Sample C Male 54.8
Sample D Male 47.6
Entorhinal cortex
nTPM: 50.2
Samples: 4

Max nTPM: 51.8
Min nTPM: 46.8
Sample A Female 51.6
Sample B Female 51.8
Sample C Male 50.5
Sample D Male 46.8
Ventral hippocampus
nTPM: 52.2
Samples: 4

Max nTPM: 60.8
Min nTPM: 45.7
Sample A Female 53.6
Sample B Female 45.7
Sample C Male 60.8
Sample D Male 48.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 95.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 90.9
Samples: 4

Max nTPM: 95.2
Min nTPM: 83.7
Sample A Male 83.7
Sample B Male 91.9
Sample C Female 95.2
Sample D Female 92.9
Hippocampal formation
nTPM: 95.4
Samples: 4

Max nTPM: 101.9
Min nTPM: 87.7
Sample A Male 99.7
Sample B Male 87.7
Sample C Female 101.9
Sample D Female 92.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
671224 Antisense, RP_040914_01_G10, Mouse strain C57BL/6J (56 days, male) 3.0

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