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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
5595.0
nTPM
HPA Brain:
4002.8
nTPM
GTEx:
5595.0
nTPM
FANTOM5:
211.9
Scaled Tags Per Million
Mouse:
2960.5
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
4002.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 4002.8
2666
Male, age 74, left hemisphere
5567.5
2586
Male, age 75, left hemisphere
5088.7
1870
Female, age 42, unknown
4493.0
2828
Female, age 72, unknown
4475.4
1830
Male, age 51, unknown
4173.7
1833
Male, age 53, unknown
3866.6
2411
Female, age 72, unknown
3786.8
2019
Male, age 18, unknown
3348.7
1827
Male, age 72, unknown
3092.2
2219
Male, age 76, both hemispheres
2135.0
Dorsal raphe nucleus nTPM: 3410.3
2750
Male, age 76, both hemispheres
3743.5
2016
Female, age 72, unknown
3580.2
1828
Male, age 53, unknown
3517.2
2298
Female, age 72, unknown
3313.2
2047
Male, age 72, unknown
2897.4
Inferior colliculus nTPM: 3392.8
2849
Male, age 72, unknown
3904.0
1848
Female, age 42, unknown
3402.5
1890
Male, age 53, unknown
3279.6
2097
Female, age 72, unknown
2985.3
Median raphe nucleus nTPM: 3815.1
2220
Male, age 76, midline
3815.1
Periaquaductal grey, anterior nTPM: 3098.3
2502
Female, age 75, unknown
3837.1
1795
Male, age 51, unknown
2924.2
1947
Male, age 18, unknown
2533.6
Periaquaductal grey, dorsal nTPM: 3286.6
2850
Male, age 76, both hemispheres
3871.3
2464
Female, age 72, unknown
3459.3
1831
Male, age 72, unknown
3144.9
1840
Male, age 53, unknown
2671.1
Periaquaductal grey, lateral nTPM: 3010.9
2140
Male, age 76, both hemispheres
3581.1
2053
Male, age 18, unknown
2976.1
2272
Male, age 74, both hemispheres
2475.5
Pretectal area nTPM: 3101.5
2825
Male, age 18, unknown
3578.4
2407
Male, age 75, both hemispheres
3575.8
1817
Female, age 42, unknown
3472.3
1815
Male, age 53, unknown
3446.6
2667
Female, age 75, unknown
3398.8
2224
Female, age 72, unknown
3355.2
2007
Male, age 72, unknown
2838.5
1816
Male, age 51, unknown
2788.2
2316
Male, age 76, right hemisphere
2696.0
1944
Female, age 72, unknown
2641.4
2273
Male, age 74, both hemispheres
2324.9
Red nucleus nTPM: 3998.5
2227
Male, age 72, unknown
4722.6
1865
Male, age 51, unknown
4697.6
2584
Male, age 75, left hemisphere
4599.8
2769
Male, age 72, unknown
4492.6
2785
Male, age 18, unknown
4483.4
1904
Male, age 53, unknown
4366.6
1954
Female, age 42, unknown
3895.0
1821
Female, age 72, unknown
3890.1
2503
Female, age 72, unknown
3561.2
2823
Male, age 76, right hemisphere
3516.4
2725
Female, age 75, unknown
2930.8
2588
Male, age 74, left hemisphere
2825.7
Substantia nigra nTPM: 3039.4
2699
Male, age 18, unknown
4054.5
1889
Female, age 72, unknown
3377.4
1851
Male, age 51, unknown
3310.7
1916
Female, age 42, unknown
3249.0
1941
Male, age 53, unknown
3231.5
2665
Male, age 74, both hemispheres
3224.6
2583
Male, age 75, right hemisphere
2730.6
2241
Male, age 72, unknown
2696.5
2590
Female, age 75, unknown
2344.5
2409
Female, age 72, unknown
2174.6
Superior colliculus nTPM: 3855.9
1913
Female, age 42, unknown
5266.1
2664
Male, age 75, both hemispheres
4749.7
2668
Female, age 75, unknown
4641.4
1995
Male, age 72, unknown
4358.5
2587
Male, age 74, left hemisphere
4155.2
1796
Male, age 53, unknown
3573.1
1839
Male, age 51, unknown
3254.2
2261
Male, age 18, unknown
2923.9
2087
Female, age 72, unknown
2901.3
1895
Male, age 76, right hemisphere
2735.6
Ventral tegmental area nTPM: 3545.7
2223
Female, age 72, unknown
5725.2
1915
Female, age 42, unknown
3553.5
2021
Male, age 53, unknown
3256.9
2218
Male, age 76, both hemispheres
3215.3
1942
Male, age 51, unknown
3198.0
2410
Female, age 72, unknown
2325.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
5595.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 5595.0
Samples: 139
Max nTPM: 15237.6
Min nTPM: 2130.3
Std nTPM: 2415.0
Median nTPM: 5146.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
15237.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
12695.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
12159.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
11979.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11204.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
10969.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
10855.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
10765.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10630.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10271.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
10067.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
9158.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9036.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8985.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
8689.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8576.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8563.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8455.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
8425.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8231.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
8192.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8044.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
7924.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
7794.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7423.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
7389.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
7382.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
7295.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
7164.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
7132.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
7090.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
6897.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
6871.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
6849.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6829.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
6440.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6298.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
6199.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
6173.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
6171.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
6159.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
6139.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6084.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
6046.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
6001.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
6001.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5971.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
5905.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
5894.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
5793.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
5783.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
5709.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
5709.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5673.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5662.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
5655.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
5614.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
5486.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5461.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
5443.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
5398.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
5387.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
5379.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
5298.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
5255.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
5187.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
5174.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
5156.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5149.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5146.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
5134.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5123.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
4992.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
4852.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4841.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
4745.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
4729.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4684.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
4666.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
4643.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4598.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
4568.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
4553.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4518.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
4480.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
4424.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
4410.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
4403.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
4378.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4314.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
4312.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
4293.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
4281.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
4259.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4226.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
4207.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4195.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
4056.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
4042.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
4025.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
4011.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
3999.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
3998.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
3958.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3906.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3883.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3868.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3854.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3812.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3751.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3745.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3716.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
3689.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
3558.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
3543.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
3499.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3493.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3417.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3297.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3208.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3182.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3146.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3125.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
3108.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
3078.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3041.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3033.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
3030.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2913.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2866.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2796.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
2737.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2647.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
2559.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2529.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2514.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2454.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2382.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2130.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.