MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:312.9 nTPM
HPA Brain:385.7 nTPM
GTEx:312.9 nTPM
FANTOM5:146.5 Scaled Tags Per Million
Pig:191.8 nTPM
Mouse:363.7 nTPM
Allen mouse:20.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 385.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 332.6
2586 Male, age 75, left hemisphere 560.0
2828 Female, age 72, unknown 374.1
2219 Male, age 76, both hemispheres 348.0
1827 Male, age 72, unknown 340.6
2019 Male, age 18, unknown 331.9
2666 Male, age 74, left hemisphere 316.8
2411 Female, age 72, unknown 303.8
1833 Male, age 53, unknown 263.2
1830 Male, age 51, unknown 244.0
1870 Female, age 42, unknown 244.0
Dorsal raphe nucleus
nTPM: 307.5
2047 Male, age 72, unknown 348.4
2298 Female, age 72, unknown 320.8
1828 Male, age 53, unknown 316.6
2750 Male, age 76, both hemispheres 304.8
2016 Female, age 72, unknown 247.0
Inferior colliculus
nTPM: 258.2
1848 Female, age 42, unknown 268.8
1890 Male, age 53, unknown 265.0
2097 Female, age 72, unknown 251.4
2849 Male, age 72, unknown 247.7
Median raphe nucleus
nTPM: 312.0
2220 Male, age 76, midline 312.0
Periaquaductal grey, anterior
nTPM: 369.7
2502 Female, age 75, unknown 385.3
1947 Male, age 18, unknown 364.3
1795 Male, age 51, unknown 359.4
Periaquaductal grey, dorsal
nTPM: 252.8
1831 Male, age 72, unknown 267.6
1840 Male, age 53, unknown 262.4
2464 Female, age 72, unknown 260.9
2850 Male, age 76, both hemispheres 220.2
Periaquaductal grey, lateral
nTPM: 213.0
2053 Male, age 18, unknown 234.4
2140 Male, age 76, both hemispheres 211.9
2272 Male, age 74, both hemispheres 192.8
Pretectal area
nTPM: 323.3
1816 Male, age 51, unknown 449.6
1817 Female, age 42, unknown 445.1
2007 Male, age 72, unknown 411.3
1944 Female, age 72, unknown 371.3
1815 Male, age 53, unknown 361.9
2667 Female, age 75, unknown 326.3
2825 Male, age 18, unknown 276.7
2407 Male, age 75, both hemispheres 270.5
2224 Female, age 72, unknown 244.2
2316 Male, age 76, right hemisphere 201.4
2273 Male, age 74, both hemispheres 198.1
Red nucleus
nTPM: 305.9
2588 Male, age 74, left hemisphere 370.7
2584 Male, age 75, left hemisphere 366.4
1821 Female, age 72, unknown 328.4
2725 Female, age 75, unknown 316.5
2785 Male, age 18, unknown 304.1
2503 Female, age 72, unknown 301.7
1954 Female, age 42, unknown 296.0
2769 Male, age 72, unknown 285.0
1865 Male, age 51, unknown 278.4
2823 Male, age 76, right hemisphere 275.3
1904 Male, age 53, unknown 274.7
2227 Male, age 72, unknown 273.1
Substantia nigra
nTPM: 385.7
1916 Female, age 42, unknown 490.9
2665 Male, age 74, both hemispheres 490.2
1851 Male, age 51, unknown 427.3
1941 Male, age 53, unknown 400.8
1889 Female, age 72, unknown 374.3
2583 Male, age 75, right hemisphere 355.6
2241 Male, age 72, unknown 354.0
2699 Male, age 18, unknown 346.3
2409 Female, age 72, unknown 316.6
2590 Female, age 75, unknown 300.7
Superior colliculus
nTPM: 300.5
2664 Male, age 75, both hemispheres 410.2
2087 Female, age 72, unknown 353.5
1796 Male, age 53, unknown 334.7
2668 Female, age 75, unknown 328.7
2261 Male, age 18, unknown 326.9
1839 Male, age 51, unknown 270.9
1895 Male, age 76, right hemisphere 261.5
2587 Male, age 74, left hemisphere 257.3
1995 Male, age 72, unknown 233.3
1913 Female, age 42, unknown 228.1
Ventral tegmental area
nTPM: 335.1
2410 Female, age 72, unknown 403.0
2218 Male, age 76, both hemispheres 378.1
1915 Female, age 42, unknown 370.7
1942 Male, age 51, unknown 329.9
2021 Male, age 53, unknown 291.8
2223 Female, age 72, unknown 237.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 312.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 312.9
Samples: 139

Max nTPM: 658.5
Min nTPM: 93.9
Std nTPM: 121.9
Median nTPM: 298.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 658.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 646.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 632.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 599.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 597.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 542.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 539.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 530.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 530.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 511.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 506.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.5
FF:10158-103A5 76 years, female 146.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 191.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 161.7
Samples: 4

Max nTPM: 215.8
Min nTPM: 94.6
Sample A Female 215.8
Sample B Female 122.6
Sample C Male 213.7
Sample D Male 94.6
Midbrain
nTPM: 166.6
Samples: 4

Max nTPM: 225.4
Min nTPM: 111.4
Sample A Female 111.4
Sample B Female 141.0
Sample C Male 225.4
Sample D Male 188.4
Periaqueductal gray
nTPM: 131.2
Samples: 3

Max nTPM: 159.0
Min nTPM: 117.0
Sample B Female 117.6
Sample C Male 159.0
Sample D Male 117.0
Superior colliculi
nTPM: 191.8
Samples: 4

Max nTPM: 241.9
Min nTPM: 131.8
Sample A Female 203.7
Sample B Female 131.8
Sample C Male 241.9
Sample D Male 189.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 363.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 363.8
Samples: 4

Max nTPM: 367.5
Min nTPM: 360.8
Sample A Male 365.6
Sample B Male 360.8
Sample C Female 367.5
Sample D Female 361.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.0
69059973 Antisense, RP_050317_04_H06, Mouse strain C57BL/6J (56 days, male) 20.0

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