MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:530.5 nTPM
HPA Brain:149.9 nTPM
GTEx:530.5 nTPM
FANTOM5:192.6 Scaled Tags Per Million
Pig:234.1 nTPM
Mouse:1407.1 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 149.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.9
2019 Male, age 18, unknown 146.3
2411 Female, age 72, unknown 141.4
1827 Male, age 72, unknown 137.6
1870 Female, age 42, unknown 127.3
1833 Male, age 53, unknown 112.3
2666 Male, age 74, left hemisphere 109.8
2219 Male, age 76, both hemispheres 104.5
1830 Male, age 51, unknown 102.6
2828 Female, age 72, unknown 99.9
2586 Male, age 75, left hemisphere 97.4
Dorsal raphe nucleus
nTPM: 134.5
2298 Female, age 72, unknown 169.2
1828 Male, age 53, unknown 138.1
2047 Male, age 72, unknown 132.5
2750 Male, age 76, both hemispheres 127.2
2016 Female, age 72, unknown 105.5
Inferior colliculus
nTPM: 141.4
2097 Female, age 72, unknown 175.2
1890 Male, age 53, unknown 152.4
1848 Female, age 42, unknown 126.6
2849 Male, age 72, unknown 111.6
Median raphe nucleus
nTPM: 126.4
2220 Male, age 76, midline 126.4
Periaquaductal grey, anterior
nTPM: 131.8
1947 Male, age 18, unknown 153.1
1795 Male, age 51, unknown 132.2
2502 Female, age 75, unknown 110.2
Periaquaductal grey, dorsal
nTPM: 112.5
2850 Male, age 76, both hemispheres 119.5
2464 Female, age 72, unknown 112.6
1831 Male, age 72, unknown 112.5
1840 Male, age 53, unknown 105.3
Periaquaductal grey, lateral
nTPM: 113.8
2272 Male, age 74, both hemispheres 138.6
2053 Male, age 18, unknown 109.4
2140 Male, age 76, both hemispheres 93.3
Pretectal area
nTPM: 149.9
1816 Male, age 51, unknown 201.0
2007 Male, age 72, unknown 191.4
1817 Female, age 42, unknown 185.8
1944 Female, age 72, unknown 170.8
1815 Male, age 53, unknown 160.2
2224 Female, age 72, unknown 154.8
2667 Female, age 75, unknown 151.0
2273 Male, age 74, both hemispheres 127.5
2316 Male, age 76, right hemisphere 107.6
2825 Male, age 18, unknown 106.6
2407 Male, age 75, both hemispheres 91.9
Red nucleus
nTPM: 132.5
1821 Female, age 72, unknown 177.5
2725 Female, age 75, unknown 176.2
2785 Male, age 18, unknown 140.6
2584 Male, age 75, left hemisphere 137.0
1865 Male, age 51, unknown 125.5
2823 Male, age 76, right hemisphere 124.3
2503 Female, age 72, unknown 124.1
1954 Female, age 42, unknown 122.7
2769 Male, age 72, unknown 117.4
2588 Male, age 74, left hemisphere 116.1
2227 Male, age 72, unknown 115.0
1904 Male, age 53, unknown 113.4
Substantia nigra
nTPM: 144.1
1889 Female, age 72, unknown 198.7
2241 Male, age 72, unknown 172.7
1916 Female, age 42, unknown 166.5
1851 Male, age 51, unknown 159.5
1941 Male, age 53, unknown 158.8
2665 Male, age 74, both hemispheres 128.9
2409 Female, age 72, unknown 125.5
2699 Male, age 18, unknown 115.0
2590 Female, age 75, unknown 114.0
2583 Male, age 75, right hemisphere 100.9
Superior colliculus
nTPM: 124.1
1796 Male, age 53, unknown 143.4
2087 Female, age 72, unknown 139.6
2261 Male, age 18, unknown 134.1
2668 Female, age 75, unknown 129.4
2587 Male, age 74, left hemisphere 129.1
1895 Male, age 76, right hemisphere 126.6
1913 Female, age 42, unknown 124.1
1839 Male, age 51, unknown 108.3
2664 Male, age 75, both hemispheres 103.6
1995 Male, age 72, unknown 103.1
Ventral tegmental area
nTPM: 134.9
2410 Female, age 72, unknown 169.7
2223 Female, age 72, unknown 145.8
1915 Female, age 42, unknown 143.0
2218 Male, age 76, both hemispheres 133.3
1942 Male, age 51, unknown 113.7
2021 Male, age 53, unknown 104.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 530.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 530.5
Samples: 139

Max nTPM: 1257.7
Min nTPM: 274.6
Std nTPM: 144.5
Median nTPM: 504.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1257.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1135.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 874.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 848.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 844.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 800.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 793.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 789.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 761.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 736.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 734.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 192.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.6
FF:10158-103A5 76 years, female 192.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 234.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 194.8
Samples: 4

Max nTPM: 300.9
Min nTPM: 121.5
Sample A Female 300.9
Sample B Female 184.1
Sample C Male 172.8
Sample D Male 121.5
Midbrain
nTPM: 199.8
Samples: 4

Max nTPM: 219.2
Min nTPM: 180.1
Sample A Female 180.1
Sample B Female 191.8
Sample C Male 207.9
Sample D Male 219.2
Periaqueductal gray
nTPM: 149.5
Samples: 3

Max nTPM: 169.1
Min nTPM: 130.8
Sample B Female 148.5
Sample C Male 169.1
Sample D Male 130.8
Superior colliculi
nTPM: 234.1
Samples: 4

Max nTPM: 328.3
Min nTPM: 175.1
Sample A Female 328.3
Sample B Female 185.8
Sample C Male 247.3
Sample D Male 175.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1407.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1407.1
Samples: 4

Max nTPM: 1519.6
Min nTPM: 1293.9
Sample A Male 1494.5
Sample B Male 1320.4
Sample C Female 1293.9
Sample D Female 1519.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
67862431 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 7.3
68203444 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 5.1

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