MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:481.5 nTPM
HPA Brain:681.6 nTPM
GTEx:481.5 nTPM
FANTOM5:737.7 Scaled Tags Per Million
Pig:1123.6 nTPM
Mouse:70.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 681.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 537.1
2411 Female, age 72, unknown 682.7
1833 Male, age 53, unknown 659.1
1870 Female, age 42, unknown 658.3
1830 Male, age 51, unknown 649.6
2828 Female, age 72, unknown 587.7
2019 Male, age 18, unknown 539.1
1827 Male, age 72, unknown 424.1
2586 Male, age 75, left hemisphere 421.2
2666 Male, age 74, left hemisphere 379.9
2219 Male, age 76, both hemispheres 369.7
Dorsal raphe nucleus
nTPM: 414.2
2750 Male, age 76, both hemispheres 689.0
2016 Female, age 72, unknown 422.6
1828 Male, age 53, unknown 396.2
2298 Female, age 72, unknown 292.2
2047 Male, age 72, unknown 271.2
Inferior colliculus
nTPM: 388.1
2849 Male, age 72, unknown 434.2
1848 Female, age 42, unknown 412.2
1890 Male, age 53, unknown 384.4
2097 Female, age 72, unknown 321.7
Median raphe nucleus
nTPM: 415.4
2220 Male, age 76, midline 415.4
Periaquaductal grey, anterior
nTPM: 312.8
2502 Female, age 75, unknown 376.5
1947 Male, age 18, unknown 287.4
1795 Male, age 51, unknown 274.5
Periaquaductal grey, dorsal
nTPM: 322.1
2464 Female, age 72, unknown 412.5
1831 Male, age 72, unknown 348.2
2850 Male, age 76, both hemispheres 281.1
1840 Male, age 53, unknown 246.4
Periaquaductal grey, lateral
nTPM: 318.2
2053 Male, age 18, unknown 374.2
2272 Male, age 74, both hemispheres 330.4
2140 Male, age 76, both hemispheres 250.0
Pretectal area
nTPM: 383.8
2667 Female, age 75, unknown 532.9
1815 Male, age 53, unknown 483.7
2316 Male, age 76, right hemisphere 431.7
2407 Male, age 75, both hemispheres 413.6
2825 Male, age 18, unknown 407.8
1817 Female, age 42, unknown 399.9
2273 Male, age 74, both hemispheres 348.9
2224 Female, age 72, unknown 334.9
2007 Male, age 72, unknown 332.6
1944 Female, age 72, unknown 283.4
1816 Male, age 51, unknown 252.3
Red nucleus
nTPM: 681.6
2823 Male, age 76, right hemisphere 838.6
2769 Male, age 72, unknown 823.3
2227 Male, age 72, unknown 778.8
1865 Male, age 51, unknown 774.0
1821 Female, age 72, unknown 762.6
1904 Male, age 53, unknown 755.8
1954 Female, age 42, unknown 665.5
2503 Female, age 72, unknown 656.9
2785 Male, age 18, unknown 641.4
2588 Male, age 74, left hemisphere 565.5
2584 Male, age 75, left hemisphere 498.5
2725 Female, age 75, unknown 418.4
Substantia nigra
nTPM: 392.0
2699 Male, age 18, unknown 504.6
2583 Male, age 75, right hemisphere 497.7
1851 Male, age 51, unknown 471.0
1889 Female, age 72, unknown 429.3
2409 Female, age 72, unknown 360.7
1941 Male, age 53, unknown 352.8
1916 Female, age 42, unknown 344.3
2590 Female, age 75, unknown 343.6
2665 Male, age 74, both hemispheres 314.7
2241 Male, age 72, unknown 300.9
Superior colliculus
nTPM: 447.7
1913 Female, age 42, unknown 644.9
1995 Male, age 72, unknown 623.0
2587 Male, age 74, left hemisphere 497.5
1839 Male, age 51, unknown 479.0
1895 Male, age 76, right hemisphere 468.8
2668 Female, age 75, unknown 449.1
1796 Male, age 53, unknown 388.3
2664 Male, age 75, both hemispheres 342.8
2087 Female, age 72, unknown 305.5
2261 Male, age 18, unknown 277.7
Ventral tegmental area
nTPM: 491.7
2223 Female, age 72, unknown 793.5
2410 Female, age 72, unknown 519.0
2218 Male, age 76, both hemispheres 436.0
1942 Male, age 51, unknown 409.5
2021 Male, age 53, unknown 399.5
1915 Female, age 42, unknown 392.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 481.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 481.5
Samples: 139

Max nTPM: 1226.0
Min nTPM: 131.9
Std nTPM: 193.9
Median nTPM: 454.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1226.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1200.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 989.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 917.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 885.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 884.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 864.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 813.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 811.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 805.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 793.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 737.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 737.7
FF:10158-103A5 76 years, female 737.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 1123.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 726.8
Samples: 4

Max nTPM: 1253.1
Min nTPM: 350.2
Sample A Female 796.0
Sample B Female 350.2
Sample C Male 507.7
Sample D Male 1253.1
Midbrain
nTPM: 1123.6
Samples: 4

Max nTPM: 3065.5
Min nTPM: 376.1
Sample A Female 3065.5
Sample B Female 658.0
Sample C Male 394.8
Sample D Male 376.1
Periaqueductal gray
nTPM: 449.7
Samples: 3

Max nTPM: 506.3
Min nTPM: 364.5
Sample B Female 506.3
Sample C Male 364.5
Sample D Male 478.2
Superior colliculi
nTPM: 641.1
Samples: 4

Max nTPM: 802.9
Min nTPM: 363.9
Sample A Female 766.2
Sample B Female 363.9
Sample C Male 631.4
Sample D Male 802.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.8
Samples: 4

Max nTPM: 78.1
Min nTPM: 62.0
Sample A Male 75.7
Sample B Male 62.0
Sample C Female 67.5
Sample D Female 78.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
671 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 4.0
670 Antisense, RP_Baylor_102908, Mouse strain C57BL/6J (56 days, male) 2.9
672 Sense, RPS_Baylor_37014, Mouse strain C57BL/6J (56 days, male) 0.3

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