HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:28.4 nTPM
HPA Brain:26.3 nTPM
GTEx:28.4 nTPM
FANTOM5:84.5 Scaled Tags Per Million
Pig:28.3 nTPM
Mouse:37.1 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA053805Antibody HPA053831
Glial cells Not detectedHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Hippocampus
nTPM: 24.4
1898 Male, age 80, left hemisphere 28.8
1855 Male, age 76, left hemisphere 24.8
2621 Female, age 67, right hemisphere 23.8
1911 Female, age 85, right hemisphere 23.2
2148 Female, age 91, left hemisphere 23.0
2529 Female, age 94, left hemisphere 23.0
Dentate gyrus
nTPM: 23.2
1927 Female, age 91, both hemispheres 25.0
2246 Female, age 85, both hemispheres 24.6
2010 Male, age 76, both hemispheres 24.4
2530 Female, age 94, left hemisphere 23.3
2531 Female, age 67, both hemispheres 21.1
2528 Male, age 74, both hemispheres 20.9
Entorhinal gyrus
nTPM: 21.2
1938 Female, age 85, left hemisphere 24.6
2117 Female, age 91, right hemisphere 24.2
2764 Male, age 80, right hemisphere 21.9
1787 Male, age 76, left hemisphere 21.2
2686 Male, age 75, right hemisphere 18.0
2613 Female, age 94, left hemisphere 17.1
Hippocampus, CA1
nTPM: 26.3
2749 Male, age 80, left hemisphere 33.3
1873 Female, age 85, both hemispheres 29.2
2082 Female, age 91, right hemisphere 23.6
2045 Male, age 76, both hemispheres 22.9
2527 Male, age 74, both hemispheres 22.3
Hippocampus, CA2
nTPM: 24.4
1963 Male, age 80, left hemisphere 28.3
1892 Male, age 76, both hemispheres 27.3
2249 Male, age 74, both hemispheres 25.3
1940 Female, age 85, left hemisphere 23.9
2113 Female, age 91, right hemisphere 21.1
2437 Female, age 94, left hemisphere 20.4
Hippocampus, CA3
nTPM: 24.0
2137 Male, age 80, left hemisphere 28.9
2436 Male, age 74, both hemispheres 28.0
1891 Female, age 85, both hemispheres 24.8
1867 Male, age 76, both hemispheres 23.9
2620 Female, age 94, left hemisphere 19.9
2861 Female, age 67, both hemispheres 18.3
Parahippocampal cortex
nTPM: 22.5
2250 Female, age 67, right hemisphere 25.2
1933 Female, age 85, both hemispheres 25.1
1850 Male, age 80, both hemispheres 24.2
1990 Female, age 91, right hemisphere 24.2
2018 Male, age 76, both hemispheres 22.9
2532 Female, age 72, left hemisphere 22.9
2692 Male, age 74, both hemispheres 22.1
2693 Female, age 94, both hemispheres 21.6
2245 Female, age 91, both hemispheres 20.4
2622 Female, age 67, right hemisphere 17.0
Perirhinal gyrus
nTPM: 24.2
1841 Female, age 85, right hemisphere 26.7
1847 Female, age 91, left hemisphere 25.3
2521 Female, age 94, right hemisphere 24.2
1794 Male, age 80, right hemisphere 22.8
2848 Male, age 76, right hemisphere 21.7
Subiculum
nTPM: 22.2
1977 Female, age 85, both hemispheres 24.2
1901 Male, age 80, both hemispheres 23.7
2042 Male, age 76, both hemispheres 23.6
2438 Female, age 94, left hemisphere 22.4
2729 Female, age 91, right hemisphere 21.8
2619 Male, age 74, both hemispheres 17.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.4
Samples: 197

Max nTPM: 51.6
Min nTPM: 17.8
Std nTPM: 5.2
Median nTPM: 27.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 51.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 49.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 46.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 46.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 43.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 41.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 38.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 38.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 37.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 37.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 37.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.5
FF:10153-102I9 76 years, female 96.4
FF:10169-103B7 60 years, female 72.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.3
Pig sample Sample description nTPM
Subiculum
nTPM: 26.2
Samples: 4

Max nTPM: 31.0
Min nTPM: 23.1
Sample A Female 31.0
Sample B Female 23.1
Sample C Male 24.0
Sample D Male 26.6
Dorsal hippocampus
nTPM: 28.3
Samples: 4

Max nTPM: 31.9
Min nTPM: 25.1
Sample A Female 31.9
Sample B Female 27.7
Sample C Male 28.6
Sample D Male 25.1
Entorhinal cortex
nTPM: 24.9
Samples: 4

Max nTPM: 26.1
Min nTPM: 21.7
Sample A Female 25.8
Sample B Female 26.0
Sample C Male 26.1
Sample D Male 21.7
Ventral hippocampus
nTPM: 24.9
Samples: 4

Max nTPM: 29.0
Min nTPM: 20.2
Sample A Female 29.0
Sample B Female 24.8
Sample C Male 20.2
Sample D Male 25.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 37.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.4
Samples: 4

Max nTPM: 37.2
Min nTPM: 29.7
Sample A Male 30.1
Sample B Male 32.7
Sample C Female 37.2
Sample D Female 29.7
Hippocampal formation
nTPM: 37.1
Samples: 4

Max nTPM: 38.2
Min nTPM: 35.9
Sample A Male 35.9
Sample B Male 38.2
Sample C Female 38.1
Sample D Female 36.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
69059861 Antisense, RP_050317_04_C06, Mouse strain C57BL/6J (56 days, male) 4.6
75043605 Antisense, RP_060417_01_A04, Mouse strain C57BL/6J (56 days, male) 4.5

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