MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:27.4 nTPM
GTEx:28.7 nTPM
FANTOM5:85.9 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:34.2 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.5
1870 Female, age 42, unknown 28.3
2411 Female, age 72, unknown 25.0
2019 Male, age 18, unknown 24.5
1830 Male, age 51, unknown 24.2
1827 Male, age 72, unknown 24.0
1833 Male, age 53, unknown 23.6
2219 Male, age 76, both hemispheres 23.3
2586 Male, age 75, left hemisphere 22.0
2666 Male, age 74, left hemisphere 19.9
2828 Female, age 72, unknown 19.9
Dorsal raphe nucleus
nTPM: 24.2
2016 Female, age 72, unknown 26.0
2298 Female, age 72, unknown 24.6
2750 Male, age 76, both hemispheres 24.2
1828 Male, age 53, unknown 23.7
2047 Male, age 72, unknown 22.6
Inferior colliculus
nTPM: 23.8
2097 Female, age 72, unknown 26.1
1890 Male, age 53, unknown 24.6
1848 Female, age 42, unknown 22.4
2849 Male, age 72, unknown 22.2
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Periaquaductal grey, anterior
nTPM: 23.8
1947 Male, age 18, unknown 25.9
2502 Female, age 75, unknown 25.8
1795 Male, age 51, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 25.3
2850 Male, age 76, both hemispheres 27.7
1840 Male, age 53, unknown 26.4
1831 Male, age 72, unknown 24.1
2464 Female, age 72, unknown 22.9
Periaquaductal grey, lateral
nTPM: 24.3
2140 Male, age 76, both hemispheres 26.8
2053 Male, age 18, unknown 23.5
2272 Male, age 74, both hemispheres 22.7
Pretectal area
nTPM: 25.5
2273 Male, age 74, both hemispheres 28.8
1816 Male, age 51, unknown 26.4
2667 Female, age 75, unknown 26.3
1815 Male, age 53, unknown 26.2
2224 Female, age 72, unknown 25.7
1817 Female, age 42, unknown 25.4
2007 Male, age 72, unknown 25.4
1944 Female, age 72, unknown 25.2
2316 Male, age 76, right hemisphere 24.9
2825 Male, age 18, unknown 23.6
2407 Male, age 75, both hemispheres 22.1
Red nucleus
nTPM: 24.7
1821 Female, age 72, unknown 28.7
1865 Male, age 51, unknown 27.3
1954 Female, age 42, unknown 26.4
1904 Male, age 53, unknown 26.2
2503 Female, age 72, unknown 25.3
2227 Male, age 72, unknown 24.6
2785 Male, age 18, unknown 24.4
2823 Male, age 76, right hemisphere 23.8
2769 Male, age 72, unknown 23.4
2725 Female, age 75, unknown 23.1
2584 Male, age 75, left hemisphere 22.7
2588 Male, age 74, left hemisphere 20.9
Substantia nigra
nTPM: 25.6
2241 Male, age 72, unknown 30.3
1889 Female, age 72, unknown 27.3
2409 Female, age 72, unknown 27.3
1916 Female, age 42, unknown 27.1
1851 Male, age 51, unknown 25.7
1941 Male, age 53, unknown 24.4
2699 Male, age 18, unknown 24.2
2590 Female, age 75, unknown 24.0
2665 Male, age 74, both hemispheres 23.0
2583 Male, age 75, right hemisphere 22.6
Superior colliculus
nTPM: 23.5
2087 Female, age 72, unknown 25.3
1995 Male, age 72, unknown 24.2
2261 Male, age 18, unknown 24.2
2587 Male, age 74, left hemisphere 24.2
1913 Female, age 42, unknown 24.1
2668 Female, age 75, unknown 23.5
1839 Male, age 51, unknown 23.1
1895 Male, age 76, right hemisphere 22.6
1796 Male, age 53, unknown 21.9
2664 Male, age 75, both hemispheres 21.6
Ventral tegmental area
nTPM: 23.8
2218 Male, age 76, both hemispheres 24.7
1915 Female, age 42, unknown 24.3
1942 Male, age 51, unknown 24.0
2410 Female, age 72, unknown 23.6
2223 Female, age 72, unknown 23.5
2021 Male, age 53, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 44.9
Min nTPM: 19.8
Std nTPM: 4.4
Median nTPM: 27.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 39.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 38.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 37.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 36.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 35.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 35.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.9
FF:10158-103A5 76 years, female 85.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 29.2
Min nTPM: 21.3
Sample A Female 29.2
Sample B Female 25.3
Sample C Male 24.5
Sample D Male 21.3
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 29.3
Min nTPM: 25.1
Sample A Female 29.3
Sample B Female 26.8
Sample C Male 27.0
Sample D Male 25.1
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 27.2
Min nTPM: 24.5
Sample B Female 24.5
Sample C Male 25.4
Sample D Male 27.2
Superior colliculi
nTPM: 26.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 25.3
Sample A Female 27.2
Sample B Female 28.2
Sample C Male 26.9
Sample D Male 25.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 37.2
Min nTPM: 32.0
Sample A Male 32.0
Sample B Male 34.8
Sample C Female 37.2
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
75043605 Antisense, RP_060417_01_A04, Mouse strain C57BL/6J (56 days, male) 2.0
69059861 Antisense, RP_050317_04_C06, Mouse strain C57BL/6J (56 days, male) 1.8

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