MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:288.1 nTPM
HPA Brain:282.8 nTPM
GTEx:288.1 nTPM
FANTOM5:655.8 Scaled Tags Per Million
Pig:213.3 nTPM
Mouse:209.5 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 282.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 254.0
2666 Male, age 74, left hemisphere 295.8
2586 Male, age 75, left hemisphere 289.9
2828 Female, age 72, unknown 256.1
1870 Female, age 42, unknown 254.2
1833 Male, age 53, unknown 244.5
2411 Female, age 72, unknown 243.0
1830 Male, age 51, unknown 241.4
2219 Male, age 76, both hemispheres 239.3
1827 Male, age 72, unknown 237.9
2019 Male, age 18, unknown 237.6
Dorsal raphe nucleus
nTPM: 242.6
2298 Female, age 72, unknown 247.6
2750 Male, age 76, both hemispheres 247.2
2016 Female, age 72, unknown 245.5
2047 Male, age 72, unknown 238.2
1828 Male, age 53, unknown 234.7
Inferior colliculus
nTPM: 236.0
1890 Male, age 53, unknown 255.6
1848 Female, age 42, unknown 241.5
2097 Female, age 72, unknown 224.9
2849 Male, age 72, unknown 222.1
Median raphe nucleus
nTPM: 259.8
2220 Male, age 76, midline 259.8
Periaquaductal grey, anterior
nTPM: 257.7
2502 Female, age 75, unknown 279.6
1947 Male, age 18, unknown 253.1
1795 Male, age 51, unknown 240.3
Periaquaductal grey, dorsal
nTPM: 218.4
1831 Male, age 72, unknown 235.2
1840 Male, age 53, unknown 229.3
2464 Female, age 72, unknown 213.1
2850 Male, age 76, both hemispheres 196.0
Periaquaductal grey, lateral
nTPM: 244.6
2272 Male, age 74, both hemispheres 279.6
2053 Male, age 18, unknown 249.5
2140 Male, age 76, both hemispheres 204.6
Pretectal area
nTPM: 231.3
2273 Male, age 74, both hemispheres 246.9
2224 Female, age 72, unknown 240.2
1815 Male, age 53, unknown 236.5
2407 Male, age 75, both hemispheres 235.9
1817 Female, age 42, unknown 233.4
1944 Female, age 72, unknown 232.2
2316 Male, age 76, right hemisphere 230.8
2007 Male, age 72, unknown 230.3
2825 Male, age 18, unknown 229.2
1816 Male, age 51, unknown 225.4
2667 Female, age 75, unknown 203.2
Red nucleus
nTPM: 253.1
2503 Female, age 72, unknown 306.7
1865 Male, age 51, unknown 281.1
1904 Male, age 53, unknown 272.3
2584 Male, age 75, left hemisphere 264.2
2785 Male, age 18, unknown 256.1
2769 Male, age 72, unknown 255.6
1821 Female, age 72, unknown 252.6
2227 Male, age 72, unknown 245.6
1954 Female, age 42, unknown 237.4
2823 Male, age 76, right hemisphere 226.6
2725 Female, age 75, unknown 223.4
2588 Male, age 74, left hemisphere 215.8
Substantia nigra
nTPM: 282.8
2665 Male, age 74, both hemispheres 314.6
2699 Male, age 18, unknown 314.6
1851 Male, age 51, unknown 310.3
1916 Female, age 42, unknown 304.9
2409 Female, age 72, unknown 287.1
2590 Female, age 75, unknown 282.8
2241 Male, age 72, unknown 269.1
1889 Female, age 72, unknown 257.0
2583 Male, age 75, right hemisphere 247.3
1941 Male, age 53, unknown 240.4
Superior colliculus
nTPM: 253.7
2668 Female, age 75, unknown 295.5
1995 Male, age 72, unknown 284.7
2587 Male, age 74, left hemisphere 277.7
1913 Female, age 42, unknown 273.9
2664 Male, age 75, both hemispheres 263.3
1796 Male, age 53, unknown 247.7
1839 Male, age 51, unknown 243.7
2261 Male, age 18, unknown 235.3
2087 Female, age 72, unknown 220.5
1895 Male, age 76, right hemisphere 194.8
Ventral tegmental area
nTPM: 269.2
1915 Female, age 42, unknown 280.6
2410 Female, age 72, unknown 276.6
2021 Male, age 53, unknown 271.5
2223 Female, age 72, unknown 266.0
2218 Male, age 76, both hemispheres 260.2
1942 Male, age 51, unknown 260.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 288.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 288.1
Samples: 139

Max nTPM: 645.8
Min nTPM: 141.5
Std nTPM: 80.0
Median nTPM: 270.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 645.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 554.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 509.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 490.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 487.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 460.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 448.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 432.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 431.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 422.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 405.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 655.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 655.8
FF:10158-103A5 76 years, female 655.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 213.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 199.2
Samples: 4

Max nTPM: 244.7
Min nTPM: 161.7
Sample A Female 244.7
Sample B Female 213.2
Sample C Male 177.2
Sample D Male 161.7
Midbrain
nTPM: 190.8
Samples: 4

Max nTPM: 262.0
Min nTPM: 146.7
Sample A Female 262.0
Sample B Female 188.4
Sample C Male 166.0
Sample D Male 146.7
Periaqueductal gray
nTPM: 165.0
Samples: 3

Max nTPM: 181.6
Min nTPM: 147.2
Sample B Female 166.3
Sample C Male 181.6
Sample D Male 147.2
Superior colliculi
nTPM: 213.3
Samples: 4

Max nTPM: 266.4
Min nTPM: 173.1
Sample A Female 234.9
Sample B Female 266.4
Sample C Male 173.1
Sample D Male 178.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 209.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.5
Samples: 4

Max nTPM: 234.3
Min nTPM: 186.1
Sample A Male 234.3
Sample B Male 197.5
Sample C Female 186.1
Sample D Female 220.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71021172 Antisense, RP_050531_01_G07, Mouse strain C57BL/6J (56 days, male) 3.6

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