MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:442.1 nTPM
HPA Brain:340.1 nTPM
GTEx:442.1 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:441.9 nTPM
Mouse:840.3 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 340.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 245.6
2019 Male, age 18, unknown 317.4
1827 Male, age 72, unknown 283.6
2666 Male, age 74, left hemisphere 269.7
2411 Female, age 72, unknown 267.7
2586 Male, age 75, left hemisphere 256.8
2219 Male, age 76, both hemispheres 246.1
2828 Female, age 72, unknown 237.8
1870 Female, age 42, unknown 206.8
1833 Male, age 53, unknown 195.2
1830 Male, age 51, unknown 175.4
Dorsal raphe nucleus
nTPM: 251.1
2298 Female, age 72, unknown 328.5
1828 Male, age 53, unknown 269.8
2047 Male, age 72, unknown 247.2
2750 Male, age 76, both hemispheres 237.7
2016 Female, age 72, unknown 172.0
Inferior colliculus
nTPM: 231.2
2097 Female, age 72, unknown 305.3
1890 Male, age 53, unknown 243.7
1848 Female, age 42, unknown 203.3
2849 Male, age 72, unknown 172.3
Median raphe nucleus
nTPM: 280.5
2220 Male, age 76, midline 280.5
Periaquaductal grey, anterior
nTPM: 259.4
1795 Male, age 51, unknown 291.8
1947 Male, age 18, unknown 245.5
2502 Female, age 75, unknown 240.8
Periaquaductal grey, dorsal
nTPM: 203.3
1831 Male, age 72, unknown 210.2
2464 Female, age 72, unknown 203.9
2850 Male, age 76, both hemispheres 200.1
1840 Male, age 53, unknown 199.0
Periaquaductal grey, lateral
nTPM: 190.5
2272 Male, age 74, both hemispheres 198.4
2053 Male, age 18, unknown 186.8
2140 Male, age 76, both hemispheres 186.2
Pretectal area
nTPM: 340.1
1816 Male, age 51, unknown 560.7
1944 Female, age 72, unknown 496.0
1817 Female, age 42, unknown 473.6
2007 Male, age 72, unknown 439.5
1815 Male, age 53, unknown 365.6
2667 Female, age 75, unknown 353.6
2224 Female, age 72, unknown 246.9
2273 Male, age 74, both hemispheres 221.4
2316 Male, age 76, right hemisphere 204.8
2825 Male, age 18, unknown 201.1
2407 Male, age 75, both hemispheres 177.9
Red nucleus
nTPM: 240.7
2785 Male, age 18, unknown 308.4
1821 Female, age 72, unknown 297.3
2725 Female, age 75, unknown 255.1
2588 Male, age 74, left hemisphere 247.7
2503 Female, age 72, unknown 238.1
1954 Female, age 42, unknown 235.2
1865 Male, age 51, unknown 231.4
2823 Male, age 76, right hemisphere 227.8
1904 Male, age 53, unknown 223.4
2769 Male, age 72, unknown 218.8
2227 Male, age 72, unknown 217.4
2584 Male, age 75, left hemisphere 188.4
Substantia nigra
nTPM: 300.7
1916 Female, age 42, unknown 414.9
1889 Female, age 72, unknown 389.9
2665 Male, age 74, both hemispheres 324.7
2241 Male, age 72, unknown 323.4
1851 Male, age 51, unknown 321.7
1941 Male, age 53, unknown 309.7
2409 Female, age 72, unknown 274.8
2699 Male, age 18, unknown 223.1
2590 Female, age 75, unknown 221.5
2583 Male, age 75, right hemisphere 203.8
Superior colliculus
nTPM: 261.2
2087 Female, age 72, unknown 439.1
2261 Male, age 18, unknown 327.6
2668 Female, age 75, unknown 297.5
1796 Male, age 53, unknown 288.2
1913 Female, age 42, unknown 251.3
2587 Male, age 74, left hemisphere 223.8
1895 Male, age 76, right hemisphere 213.7
1995 Male, age 72, unknown 210.3
1839 Male, age 51, unknown 185.8
2664 Male, age 75, both hemispheres 174.6
Ventral tegmental area
nTPM: 261.5
2410 Female, age 72, unknown 302.7
1915 Female, age 42, unknown 302.1
2218 Male, age 76, both hemispheres 286.5
2223 Female, age 72, unknown 241.9
1942 Male, age 51, unknown 225.7
2021 Male, age 53, unknown 210.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 442.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 442.1
Samples: 139

Max nTPM: 886.7
Min nTPM: 210.4
Std nTPM: 143.1
Median nTPM: 415.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 886.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 868.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 818.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 813.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 800.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 729.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 723.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 716.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 699.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 670.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 657.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 441.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 350.8
Samples: 4

Max nTPM: 467.3
Min nTPM: 240.4
Sample A Female 467.3
Sample B Female 273.5
Sample C Male 421.8
Sample D Male 240.4
Midbrain
nTPM: 395.6
Samples: 4

Max nTPM: 510.1
Min nTPM: 310.4
Sample A Female 310.4
Sample B Female 358.9
Sample C Male 510.1
Sample D Male 402.9
Periaqueductal gray
nTPM: 326.1
Samples: 3

Max nTPM: 383.4
Min nTPM: 278.0
Sample B Female 316.8
Sample C Male 383.4
Sample D Male 278.0
Superior colliculi
nTPM: 442.0
Samples: 4

Max nTPM: 553.8
Min nTPM: 309.1
Sample A Female 486.2
Sample B Female 309.1
Sample C Male 553.8
Sample D Male 418.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 840.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 840.4
Samples: 4

Max nTPM: 883.7
Min nTPM: 805.5
Sample A Male 834.1
Sample B Male 838.1
Sample C Female 805.5
Sample D Female 883.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
70191997 Antisense, RP_050517_01_A08, Mouse strain C57BL/6J (56 days, male) 20.2

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