HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:350.8 nTPM
HPA Brain:240.1 nTPM
GTEx:350.8 nTPM
FANTOM5:418.8 Scaled Tags Per Million
Pig:94.5 nTPM
Mouse:298.6 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007730Antibody CAB004682
Glial cells MediumMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 240.1
Sample id Sample description nTPM
Hippocampus
nTPM: 234.2
1898 Male, age 80, left hemisphere 277.6
2529 Female, age 94, left hemisphere 272.3
1855 Male, age 76, left hemisphere 240.2
1911 Female, age 85, right hemisphere 217.7
2148 Female, age 91, left hemisphere 211.7
2621 Female, age 67, right hemisphere 185.6
Dentate gyrus
nTPM: 213.6
2528 Male, age 74, both hemispheres 320.0
2010 Male, age 76, both hemispheres 253.3
2246 Female, age 85, both hemispheres 196.2
2530 Female, age 94, left hemisphere 189.7
1927 Female, age 91, both hemispheres 184.4
2531 Female, age 67, both hemispheres 137.7
Entorhinal gyrus
nTPM: 192.5
2117 Female, age 91, right hemisphere 282.9
1938 Female, age 85, left hemisphere 221.6
1787 Male, age 76, left hemisphere 209.6
2764 Male, age 80, right hemisphere 204.3
2686 Male, age 75, right hemisphere 131.7
2613 Female, age 94, left hemisphere 104.6
Hippocampus, CA1
nTPM: 226.9
2527 Male, age 74, both hemispheres 284.5
1873 Female, age 85, both hemispheres 231.8
2082 Female, age 91, right hemisphere 226.4
2749 Male, age 80, left hemisphere 196.8
2045 Male, age 76, both hemispheres 195.0
Hippocampus, CA2
nTPM: 240.1
2249 Male, age 74, both hemispheres 370.2
2113 Female, age 91, right hemisphere 234.2
1963 Male, age 80, left hemisphere 231.5
1940 Female, age 85, left hemisphere 221.2
1892 Male, age 76, both hemispheres 198.6
2437 Female, age 94, left hemisphere 185.1
Hippocampus, CA3
nTPM: 200.2
2436 Male, age 74, both hemispheres 294.2
1891 Female, age 85, both hemispheres 236.3
1867 Male, age 76, both hemispheres 224.1
2137 Male, age 80, left hemisphere 166.5
2620 Female, age 94, left hemisphere 157.0
2861 Female, age 67, both hemispheres 123.0
Parahippocampal cortex
nTPM: 197.8
2250 Female, age 67, right hemisphere 247.2
2018 Male, age 76, both hemispheres 234.1
1990 Female, age 91, right hemisphere 221.5
1933 Female, age 85, both hemispheres 220.4
1850 Male, age 80, both hemispheres 213.6
2245 Female, age 91, both hemispheres 190.4
2692 Male, age 74, both hemispheres 183.5
2532 Female, age 72, left hemisphere 165.6
2693 Female, age 94, both hemispheres 153.4
2622 Female, age 67, right hemisphere 148.4
Perirhinal gyrus
nTPM: 215.8
1847 Female, age 91, left hemisphere 245.8
1794 Male, age 80, right hemisphere 221.6
1841 Female, age 85, right hemisphere 221.0
2521 Female, age 94, right hemisphere 220.4
2848 Male, age 76, right hemisphere 170.4
Subiculum
nTPM: 236.8
2729 Female, age 91, right hemisphere 280.8
2619 Male, age 74, both hemispheres 266.6
2042 Male, age 76, both hemispheres 244.7
1977 Female, age 85, both hemispheres 240.2
1901 Male, age 80, both hemispheres 208.7
2438 Female, age 94, left hemisphere 179.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 350.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 350.8
Samples: 197

Max nTPM: 575.1
Min nTPM: 229.0
Std nTPM: 67.9
Median nTPM: 344.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 575.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 559.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 527.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 515.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 499.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 498.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 495.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 493.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 489.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 470.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 465.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 418.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 418.8
FF:10153-102I9 76 years, female 420.2
FF:10169-103B7 60 years, female 417.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 94.5
Pig sample Sample description nTPM
Subiculum
nTPM: 55.9
Samples: 4

Max nTPM: 72.0
Min nTPM: 42.0
Sample A Female 72.0
Sample B Female 55.4
Sample C Male 42.0
Sample D Male 54.0
Dorsal hippocampus
nTPM: 94.5
Samples: 4

Max nTPM: 139.0
Min nTPM: 72.7
Sample A Female 139.0
Sample B Female 85.1
Sample C Male 81.1
Sample D Male 72.7
Entorhinal cortex
nTPM: 56.1
Samples: 4

Max nTPM: 76.4
Min nTPM: 43.8
Sample A Female 49.8
Sample B Female 76.4
Sample C Male 54.4
Sample D Male 43.8
Ventral hippocampus
nTPM: 72.4
Samples: 4

Max nTPM: 80.7
Min nTPM: 62.2
Sample A Female 80.7
Sample B Female 62.2
Sample C Male 68.3
Sample D Male 78.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 298.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 286.9
Samples: 4

Max nTPM: 301.5
Min nTPM: 261.5
Sample A Male 301.5
Sample B Male 293.1
Sample C Female 291.5
Sample D Female 261.5
Hippocampal formation
nTPM: 298.6
Samples: 4

Max nTPM: 333.6
Min nTPM: 268.9
Sample A Male 333.6
Sample B Male 268.9
Sample C Female 281.3
Sample D Female 310.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 6.6
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 1.5
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.9

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