MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:688.2 nTPM
HPA Brain:448.9 nTPM
GTEx:688.2 nTPM
FANTOM5:651.9 Scaled Tags Per Million
Pig:137.8 nTPM
Mouse:357.8 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 448.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 315.9
2411 Female, age 72, unknown 410.2
1870 Female, age 42, unknown 387.9
2828 Female, age 72, unknown 380.2
1827 Male, age 72, unknown 339.1
1833 Male, age 53, unknown 337.4
1830 Male, age 51, unknown 306.5
2019 Male, age 18, unknown 292.7
2219 Male, age 76, both hemispheres 267.6
2586 Male, age 75, left hemisphere 225.5
2666 Male, age 74, left hemisphere 211.4
Dorsal raphe nucleus
nTPM: 448.9
2298 Female, age 72, unknown 526.6
2016 Female, age 72, unknown 448.4
2047 Male, age 72, unknown 435.3
2750 Male, age 76, both hemispheres 425.9
1828 Male, age 53, unknown 408.4
Inferior colliculus
nTPM: 361.8
2097 Female, age 72, unknown 415.1
1848 Female, age 42, unknown 406.0
2849 Male, age 72, unknown 316.8
1890 Male, age 53, unknown 309.5
Median raphe nucleus
nTPM: 402.8
2220 Male, age 76, midline 402.8
Periaquaductal grey, anterior
nTPM: 371.2
1947 Male, age 18, unknown 399.8
2502 Female, age 75, unknown 372.7
1795 Male, age 51, unknown 341.2
Periaquaductal grey, dorsal
nTPM: 371.8
1840 Male, age 53, unknown 411.2
2850 Male, age 76, both hemispheres 399.1
2464 Female, age 72, unknown 382.5
1831 Male, age 72, unknown 294.6
Periaquaductal grey, lateral
nTPM: 383.8
2140 Male, age 76, both hemispheres 413.3
2053 Male, age 18, unknown 371.2
2272 Male, age 74, both hemispheres 366.9
Pretectal area
nTPM: 342.6
2273 Male, age 74, both hemispheres 493.3
2224 Female, age 72, unknown 426.0
2667 Female, age 75, unknown 393.0
2825 Male, age 18, unknown 374.3
2316 Male, age 76, right hemisphere 367.7
1817 Female, age 42, unknown 304.2
1944 Female, age 72, unknown 302.9
1815 Male, age 53, unknown 300.9
1816 Male, age 51, unknown 291.5
2407 Male, age 75, both hemispheres 268.4
2007 Male, age 72, unknown 246.1
Red nucleus
nTPM: 346.9
1821 Female, age 72, unknown 451.1
2503 Female, age 72, unknown 406.1
1954 Female, age 42, unknown 394.8
1904 Male, age 53, unknown 376.3
2769 Male, age 72, unknown 376.1
2227 Male, age 72, unknown 375.3
2823 Male, age 76, right hemisphere 366.7
1865 Male, age 51, unknown 355.8
2725 Female, age 75, unknown 345.1
2785 Male, age 18, unknown 280.9
2588 Male, age 74, left hemisphere 241.6
2584 Male, age 75, left hemisphere 193.4
Substantia nigra
nTPM: 374.6
2241 Male, age 72, unknown 496.4
1916 Female, age 42, unknown 484.9
1851 Male, age 51, unknown 447.8
2699 Male, age 18, unknown 430.6
2409 Female, age 72, unknown 364.8
1941 Male, age 53, unknown 362.8
2590 Female, age 75, unknown 335.7
1889 Female, age 72, unknown 333.0
2665 Male, age 74, both hemispheres 247.2
2583 Male, age 75, right hemisphere 242.7
Superior colliculus
nTPM: 321.4
2587 Male, age 74, left hemisphere 379.5
1796 Male, age 53, unknown 361.8
1995 Male, age 72, unknown 344.5
1839 Male, age 51, unknown 326.1
1913 Female, age 42, unknown 325.9
1895 Male, age 76, right hemisphere 317.3
2087 Female, age 72, unknown 305.7
2261 Male, age 18, unknown 295.2
2668 Female, age 75, unknown 289.0
2664 Male, age 75, both hemispheres 268.5
Ventral tegmental area
nTPM: 399.6
1915 Female, age 42, unknown 445.6
2410 Female, age 72, unknown 431.3
2223 Female, age 72, unknown 392.9
1942 Male, age 51, unknown 381.4
2218 Male, age 76, both hemispheres 376.5
2021 Male, age 53, unknown 369.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 688.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 688.2
Samples: 139

Max nTPM: 1479.4
Min nTPM: 345.0
Std nTPM: 185.3
Median nTPM: 645.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1479.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1252.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1160.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1128.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1096.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1090.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1059.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1031.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1022.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1012.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1011.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 651.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 651.9
FF:10158-103A5 76 years, female 651.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 137.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.8
Samples: 4

Max nTPM: 170.9
Min nTPM: 116.8
Sample A Female 170.9
Sample B Female 129.5
Sample C Male 116.8
Sample D Male 133.8
Midbrain
nTPM: 123.7
Samples: 4

Max nTPM: 230.1
Min nTPM: 65.7
Sample A Female 230.1
Sample B Female 128.8
Sample C Male 65.7
Sample D Male 70.0
Periaqueductal gray
nTPM: 97.2
Samples: 3

Max nTPM: 107.6
Min nTPM: 85.5
Sample B Female 107.6
Sample C Male 98.6
Sample D Male 85.5
Superior colliculi
nTPM: 108.2
Samples: 4

Max nTPM: 147.6
Min nTPM: 85.2
Sample A Female 147.6
Sample B Female 110.1
Sample C Male 85.2
Sample D Male 89.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 357.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 357.8
Samples: 4

Max nTPM: 372.4
Min nTPM: 332.7
Sample A Male 372.4
Sample B Male 365.8
Sample C Female 332.7
Sample D Female 360.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 8.1
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 2.4
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.6

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