MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1236.6 nTPM
HPA Brain:638.7 nTPM
GTEx:1236.6 nTPM
FANTOM5:95.8 Scaled Tags Per Million
Pig:5.8 nTPM
Mouse:180.4 nTPM
Allen mouse:16.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 638.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 621.9
2586 Male, age 75, left hemisphere 849.9
2666 Male, age 74, left hemisphere 671.3
2828 Female, age 72, unknown 657.0
2411 Female, age 72, unknown 641.8
2019 Male, age 18, unknown 637.9
1827 Male, age 72, unknown 594.9
1830 Male, age 51, unknown 586.2
1870 Female, age 42, unknown 573.4
1833 Male, age 53, unknown 551.9
2219 Male, age 76, both hemispheres 454.5
Dorsal raphe nucleus
nTPM: 561.3
2298 Female, age 72, unknown 615.8
2016 Female, age 72, unknown 586.4
2750 Male, age 76, both hemispheres 564.5
1828 Male, age 53, unknown 535.7
2047 Male, age 72, unknown 503.9
Inferior colliculus
nTPM: 533.3
2097 Female, age 72, unknown 584.0
1890 Male, age 53, unknown 532.3
2849 Male, age 72, unknown 513.7
1848 Female, age 42, unknown 503.2
Median raphe nucleus
nTPM: 550.9
2220 Male, age 76, midline 550.9
Periaquaductal grey, anterior
nTPM: 638.7
2502 Female, age 75, unknown 748.9
1795 Male, age 51, unknown 605.4
1947 Male, age 18, unknown 561.9
Periaquaductal grey, dorsal
nTPM: 531.6
1840 Male, age 53, unknown 575.1
1831 Male, age 72, unknown 563.0
2464 Female, age 72, unknown 542.5
2850 Male, age 76, both hemispheres 445.7
Periaquaductal grey, lateral
nTPM: 554.5
2053 Male, age 18, unknown 609.7
2272 Male, age 74, both hemispheres 529.0
2140 Male, age 76, both hemispheres 524.8
Pretectal area
nTPM: 547.5
2407 Male, age 75, both hemispheres 629.4
2316 Male, age 76, right hemisphere 626.0
2825 Male, age 18, unknown 574.3
1815 Male, age 53, unknown 567.0
2007 Male, age 72, unknown 554.5
2273 Male, age 74, both hemispheres 554.4
1817 Female, age 42, unknown 544.6
1816 Male, age 51, unknown 536.7
2224 Female, age 72, unknown 516.7
1944 Female, age 72, unknown 477.2
2667 Female, age 75, unknown 441.2
Red nucleus
nTPM: 626.8
2503 Female, age 72, unknown 741.9
2584 Male, age 75, left hemisphere 718.0
2588 Male, age 74, left hemisphere 685.1
1904 Male, age 53, unknown 663.8
1865 Male, age 51, unknown 640.6
2227 Male, age 72, unknown 636.2
2769 Male, age 72, unknown 615.3
2725 Female, age 75, unknown 595.6
2785 Male, age 18, unknown 580.4
1821 Female, age 72, unknown 567.0
1954 Female, age 42, unknown 561.2
2823 Male, age 76, right hemisphere 516.8
Substantia nigra
nTPM: 626.4
2665 Male, age 74, both hemispheres 741.4
2590 Female, age 75, unknown 689.5
1851 Male, age 51, unknown 689.1
2583 Male, age 75, right hemisphere 650.8
1916 Female, age 42, unknown 639.5
2699 Male, age 18, unknown 622.6
2241 Male, age 72, unknown 606.1
2409 Female, age 72, unknown 568.8
1889 Female, age 72, unknown 531.1
1941 Male, age 53, unknown 525.4
Superior colliculus
nTPM: 620.8
2664 Male, age 75, both hemispheres 765.8
1995 Male, age 72, unknown 690.6
2587 Male, age 74, left hemisphere 675.6
1796 Male, age 53, unknown 634.1
2261 Male, age 18, unknown 619.7
2668 Female, age 75, unknown 609.1
1913 Female, age 42, unknown 608.6
1839 Male, age 51, unknown 583.6
2087 Female, age 72, unknown 524.7
1895 Male, age 76, right hemisphere 496.1
Ventral tegmental area
nTPM: 602.0
2021 Male, age 53, unknown 666.3
1915 Female, age 42, unknown 665.8
2223 Female, age 72, unknown 629.8
1942 Male, age 51, unknown 619.5
2410 Female, age 72, unknown 540.6
2218 Male, age 76, both hemispheres 490.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1236.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1236.6
Samples: 139

Max nTPM: 4699.2
Min nTPM: 441.4
Std nTPM: 551.6
Median nTPM: 1141.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4699.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3116.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3012.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2541.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2530.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2325.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2245.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2147.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2123.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2104.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2015.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.8
FF:10158-103A5 76 years, female 95.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 4.9
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 4.4
Sample C Male 3.3
Sample D Male 4.9
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 5.8
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 5.8
Sample C Male 3.7
Sample D Male 4.0
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 7.1
Min nTPM: 3.9
Sample B Female 6.4
Sample C Male 3.9
Sample D Male 7.1
Superior colliculi
nTPM: 2.8
Samples: 4

Max nTPM: 4.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 2.2
Sample C Male 3.8
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 180.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.4
Samples: 4

Max nTPM: 202.5
Min nTPM: 166.0
Sample A Male 202.5
Sample B Male 166.0
Sample C Female 169.0
Sample D Female 184.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.8
69028599 Antisense, RP_050316_01_F06, Mouse strain C57BL/6J (56 days, male) 16.8

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