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MEOX2
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Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
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Cluster
Reliability
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Category
Cluster
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Category
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Category
Cluster
Annotation
Disease
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Searches
Location
Cell line
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Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

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  • MEOX2
INTERACTION
Protein interactions
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MEOX2
Gene descriptioni

Full gene name according to HGNC.

Mesenchyme homeobox 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transcription factors
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

1
HUMAN PROTEIN ATLAS INFORMATIONi

Summary of data presented in the Tissue section, with a representative image of protein expression (left) and an interactive chart showing the tissue-specific mRNA expression (right). The image and the chart are clickable and will redirect to more Tissue data.
This section contains information regarding the expression profiles of protein-coding genes in normal human tissue, both on the mRNA and protein level. The protein expression data is derived from antibody-based protein profiling using immunohistochemistry.

Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Adipose tissue - Mixed function (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (adipose tissue, placenta)
Tau specificity score (RNA)i

Tau specificity score is a numerical indicator of the specificity of the gene expression across cells or tissues. The value ranges from 0 and 1, where 0 indicates identical expression across all cells/tissue types, while 1 indicates expression in a single cell/tissue type.

0.60
Tissue distribution (RNA)i

The RNA distribution category is based on mRNA expression levels in the analyzed samples based on a combination of data from HPA and GTEX. The categories include: detected in all, detected in many, detected in some, detected in single and not detected.

Detected in many
Protein evidencei

Evidence score for genes based on UniProt protein existence (UniProt evidence); neXtProt protein existence (neXtProt evidence);and a Human Protein Atlas antibody- or RNA based score (HPA evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable.

Read more
Evidence at protein level
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Not available
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.

Not available
INTERACTION SUMMARYi

In the Interaction summary a network plot of the gene's interaction partners is shown with nodes representing genes and edges representing the interaction type and the confidence (MI score) for the interaction. The type of interaction (direct interaction or physical association) is reflected by the colour of the edges, while the confidence of the interaction is reflected by the thickness of the edges. Scores larger than 0.6 (high confidence) have a thicker line than scores between 0.45 and 0.6 (medium confidence).

The highlight bar in the top of the plot can be used to colour the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass.

Nodes can also be highlighted using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Highlight:
Off
Subcell location
Predicted location
Tissue specificity
Protein class

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Adipose tissue - Mixed function

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


Number of interactions: 158 View all protein interaction data in IntAct
Interaction Interaction type Confidence MI score # Interactions
CSF2 Physical association High 0.72 4
PGBD1 Physical association High 0.72 11
SMAD3 Physical association High 0.72 52
CRCT1 Physical association High 0.67 46
FUCA2 Physical association High 0.67 12
KRTAP12-1 Physical association High 0.67 50
SPRY1 Physical association High 0.67 59
KRTAP10-9 Physical association High 0.6 182
ACTN4 Physical association Medium 0.56 14
ADAMTS12 Physical association Medium 0.56 3
AGPAT1 Physical association Medium 0.56 1
AHCYL1 Physical association Medium 0.56 27
ANP32B Physical association Medium 0.56 10
ARHGEF7 Physical association Medium 0.56 14
BCL2L15 Physical association Medium 0.56 6
BTK Physical association Medium 0.56 12
C1orf109 Physical association Medium 0.56 121
CARD9 Physical association Medium 0.56 52
CASP14 Physical association Medium 0.56 2
CCDC103 Physical association Medium 0.56 17
CCNC Physical association Medium 0.56 69
CHIC2 Physical association Medium 0.56 53
CHRD Physical association Medium 0.56 40
CIAPIN1 Physical association Medium 0.56 6
CIB3 Physical association Medium 0.56 44
CNTNAP2 Physical association Medium 0.56 4
CPNE6 Physical association Medium 0.56 1
CPSF4 Physical association Medium 0.56 3
CSDC2 Physical association Medium 0.56 3
CTNNBL1 Physical association Medium 0.56 11
CXXC1 Physical association Medium 0.56 5
DGCR8 Physical association Medium 0.56 4
DOCK8 Physical association Medium 0.56 7
DYNLL2 Physical association Medium 0.56 50
DYNLT5 Physical association Medium 0.56 1
EDF1 Physical association Medium 0.56 6
EFEMP1 Physical association Medium 0.56 27
EFEMP2 Physical association Medium 0.56 83
EFNA3 Physical association Medium 0.56 4
EIF1AD Physical association Medium 0.56 30
EIF5A Physical association Medium 0.56 9
EMD Physical association Medium 0.56 72
EPM2AIP1 Physical association Medium 0.56 40
ESRRG Physical association Medium 0.56 7
FAM13C Physical association Medium 0.56 12
FBLN5 Physical association Medium 0.56 11
FKBP6 Physical association Medium 0.56 26
FOXR1 Physical association Medium 0.56 14
FUT11 Physical association Medium 0.56 2
GMCL2 Physical association Medium 0.56 22
GMPR2 Physical association Medium 0.56 2
GOLGA8F Physical association Medium 0.56 19
GPATCH2L Physical association Medium 0.56 19
GPSM3 Physical association Medium 0.56 38
HAT1 Physical association Medium 0.56 26
HDHD2 Physical association Medium 0.56 1
HEXIM2 Physical association Medium 0.56 38
HGF Physical association Medium 0.56 2
HP1BP3 Physical association Medium 0.56 1
HTR1E Physical association Medium 0.56 2
IGFN1 Physical association Medium 0.56 1
IL1A Physical association Medium 0.56 5
IP6K2 Physical association Medium 0.56 7
ITM2A Physical association Medium 0.56 7
KAT5 Physical association Medium 0.56 180
KIZ Physical association Medium 0.56 6
KLC4 Physical association Medium 0.56 18
KLHL38 Physical association Medium 0.56 72
KRT80 Physical association Medium 0.56 3
KRT86 Physical association Medium 0.56 38
KRTAP10-11 Physical association Medium 0.56 31
KRTAP10-5 Physical association Medium 0.56 115
KRTAP10-8 Physical association Medium 0.56 325
KRTAP12-4 Physical association Medium 0.56 41
KRTAP4-11 Physical association Medium 0.56 61
KRTAP4-2 Physical association Medium 0.56 102
KRTAP4-7 Physical association Medium 0.56 11
KRTAP5-6 Physical association Medium 0.56 73
KRTAP5-9 Physical association Medium 0.56 166
KRTAP9-2 Physical association Medium 0.56 123
KTN1 Physical association Medium 0.56 6
LAMTOR5 Physical association Medium 0.56 17
LCE1B Physical association Medium 0.56 69
LCE2A Physical association Medium 0.56 43
LCE4A Physical association Medium 0.56 63
LSM2 Physical association Medium 0.56 29
MAGED1 Physical association Medium 0.56 79
MAPKBP1 Physical association Medium 0.56 48
MMP3 Physical association Medium 0.56 1
MORN3 Physical association Medium 0.56 57
MRFAP1L1 Physical association Medium 0.56 46
MSI2 Physical association Medium 0.56 3
NAA10 Physical association Medium 0.56 41
NALCN Physical association Medium 0.56 1
NCALD Physical association Medium 0.56 19
NCK2 Physical association Medium 0.56 113
NTF3 Physical association Medium 0.56 1
ODAD4 Physical association Medium 0.56 7
OIT3 Physical association Medium 0.56 9
OSGIN1 Physical association Medium 0.56 30
P4HA3 Physical association Medium 0.56 39
PACSIN2 Physical association Medium 0.56 10
PAGE2 Physical association Medium 0.56 2
PARVG Physical association Medium 0.56 23
PCSK5 Physical association Medium 0.56 10
PIN1 Physical association Medium 0.56 112
PRKAB2 Physical association Medium 0.56 126
PRR19 Physical association Medium 0.56 2
PSMB10 Physical association Medium 0.56 7
PSMC1 Physical association Medium 0.56 27
PSMD14 Physical association Medium 0.56 18
RCHY1 Physical association Medium 0.56 17
RHOJ Physical association Medium 0.56 16
RMND5A Physical association Medium 0.56 18
RPL15 Physical association Medium 0.56 6
SCNM1 Physical association Medium 0.56 148
SET Physical association Medium 0.56 13
SHFL Physical association Medium 0.56 26
SLC48A1 Physical association Medium 0.56 6
SMARCE1 Physical association Medium 0.56 56
SPP1 Physical association Medium 0.56 7
SPRY2 Physical association Medium 0.56 51
SSX3 Physical association Medium 0.56 12
STK16 Physical association Medium 0.56 66
STX11 Physical association Medium 0.56 80
STX16 Physical association Medium 0.56 4
STXBP1 Physical association Medium 0.56 16
SYT17 Physical association Medium 0.56 34
TBCEL Physical association Medium 0.56 4
TCEA2 Physical association Medium 0.56 88
TICAM2 Physical association Medium 0.56 4
TMEM100 Physical association Medium 0.56 32
TP53BP1 Physical association Medium 0.56 71
TRAF6 Physical association Medium 0.56 60
TRIM41 Physical association Medium 0.56 108
TRIM42 Physical association Medium 0.56 112
TTC9C Physical association Medium 0.56 14
TXLNA Physical association Medium 0.56 76
UBL4A Physical association Medium 0.56 12
UBL4B Physical association Medium 0.56 4
UNC45A Physical association Medium 0.56 6
USE1 Physical association Medium 0.56 17
VDR Physical association Medium 0.56 11
WFDC9 Physical association Medium 0.56 1
XRCC2 Physical association Medium 0.56 4
ZBED4 Physical association Medium 0.56 1
ZMAT2 Physical association Medium 0.56 44
ZNF124 Physical association Medium 0.56 45
ZNF329 Physical association Medium 0.56 21
ZNF404 Physical association Medium 0.56 1
ZNF417 Physical association Medium 0.56 140
ZNF564 Physical association Medium 0.56 30
ZNF572 Physical association Medium 0.56 58
ZNF587 Physical association Medium 0.56 102
ZNF695 Physical association Medium 0.56 1
PAX3 Direct interaction Medium 0.53 3
MDFI Physical association Medium 0.49 277
PRPF31 Physical association Medium 0.49 118
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

MEOX2 is not a metabolic protein

Contact

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The Human Protein Atlas

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org