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EGFR
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Field
Term
Gene name
Class
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Class
Keyword
Chromosome
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Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
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Category
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Annotation
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Location
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Reliability
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Category
Cluster
Interacting gene
Number of interactions
Pathway
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Score
Score
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Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

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  • PATHOLOGY

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  • EGFR
INTERACTION
TRANSPORT REACTIONS
Protein interactions
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

EGFR
Gene descriptioni

Full gene name according to HGNC.

Epidermal growth factor receptor
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Enzymes
FDA approved drug targets
Human disease related genes
Metabolic proteins
Plasma proteins
RAS pathway related proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Membrane
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
HUMAN PROTEIN ATLAS INFORMATIONi

Summary of data presented in the Tissue section, with a representative image of protein expression (left) and an interactive chart showing the tissue-specific mRNA expression (right). The image and the chart are clickable and will redirect to more Tissue data.
This section contains information regarding the expression profiles of protein-coding genes in normal human tissue, both on the mRNA and protein level. The protein expression data is derived from antibody-based protein profiling using immunohistochemistry.

Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Placenta - Pregnancy (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (placenta)
Tau specificity score (RNA)i

Tau specificity score is a numerical indicator of the specificity of the gene expression across cells or tissues. The value ranges from 0 and 1, where 0 indicates identical expression across all cells/tissue types, while 1 indicates expression in a single cell/tissue type.

0.39
Tissue distribution (RNA)i

The RNA distribution category is based on mRNA expression levels in the analyzed samples based on a combination of data from HPA and GTEX. The categories include: detected in all, detected in many, detected in some, detected in single and not detected.

Detected in many
Protein evidencei

Evidence score for genes based on UniProt protein existence (UniProt evidence); neXtProt protein existence (neXtProt evidence);and a Human Protein Atlas antibody- or RNA based score (HPA evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable.

Read more
Evidence at protein level
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Plasma membrane, Cell Junctions In addition localized to the Nucleoplasm, Nucleoli
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.

Secreted to blood
INTERACTION SUMMARYi

In the Interaction summary a network plot of the gene's interaction partners is shown with nodes representing genes and edges representing the interaction type and the confidence (MI score) for the interaction. The type of interaction (direct interaction or physical association) is reflected by the colour of the edges, while the confidence of the interaction is reflected by the thickness of the edges. Scores larger than 0.6 (high confidence) have a thicker line than scores between 0.45 and 0.6 (medium confidence).

The highlight bar in the top of the plot can be used to colour the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass.

Nodes can also be highlighted using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Highlight:
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Subcell location
Predicted location
Tissue specificity
Protein class

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Fields »
e.g. Brain enriched, Localized to mitochondria, Placenta - Pregnancy

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


Number of interactions: 270 View all protein interaction data in IntAct
Interaction Interaction type Confidence MI score # Interactions
GRB2 Direct interaction High 0.98 165
SHC1 Direct interaction High 0.98 17
EGF Direct interaction High 0.97 2
CBL Direct interaction High 0.96 34
ERBB2 Physical association High 0.95 49
STAT3 Physical association High 0.92 55
ERBB3 Physical association High 0.91 19
SRC Physical association High 0.9 56
PTPN1 Direct interaction High 0.9 27
HSP90AB1 Physical association High 0.89 137
ERRFI1 Direct interaction High 0.87 4
YWHAQ Physical association High 0.85 54
PLCG1 Direct interaction High 0.85 27
SFN Physical association High 0.83 39
AP2M1 Physical association High 0.83 38
NCK1 Direct interaction High 0.82 24
PTPN11 Direct interaction High 0.82 25
LYN Physical association High 0.82 29
MUC1 Physical association High 0.82 4
CAV1 Physical association High 0.81 28
PIK3C2B Direct interaction High 0.81 5
PIK3R1 Direct interaction High 0.81 41
HDAC6 Direct interaction High 0.81 19
PTPN12 Physical association High 0.81 8
HSPA8 Physical association High 0.8 35
MET Direct interaction High 0.8 16
ANKS1A Direct interaction High 0.79 3
PLCG2 Direct interaction High 0.79 11
CDC37 Physical association High 0.79 124
GAPDH Physical association High 0.79 28
TXN Physical association High 0.79 26
TGFA Direct interaction High 0.78 3
HSP90AA1 Physical association High 0.78 51
STAT1 Physical association High 0.77 19
SH2B1 Direct interaction High 0.77 2
ANXA1 Physical association High 0.77 6
YWHAZ Physical association High 0.77 128
PIK3R2 Direct interaction High 0.76 21
PIK3R3 Direct interaction High 0.76 70
CRKL Physical association High 0.75 24
CTNND1 Physical association High 0.75 5
HSPA9 Physical association High 0.75 10
PTK2 Physical association High 0.75 24
TUBA1A Physical association High 0.75 7
S100A4 Direct interaction High 0.74 13
LRIG1 Physical association High 0.74 5
APBB2 Direct interaction High 0.74 2
CISH Direct interaction High 0.74 4
BAIAP2 Physical association High 0.74 12
CDH1 Physical association High 0.74 35
GAB1 Physical association High 0.74 10
GRB10 Direct interaction High 0.73 6
STUB1 Physical association High 0.72 54
EPS8 Physical association High 0.71 14
VAPA Physical association High 0.71 37
SH3KBP1 Physical association High 0.69 33
ABL1 Direct interaction High 0.69 30
ABL2 Direct interaction High 0.69 6
BLK Direct interaction High 0.69 22
CRK Direct interaction High 0.69 54
MAPK8IP2 Direct interaction High 0.69 4
PTPRB Direct interaction High 0.69 3
SLA Direct interaction High 0.69 1
ZAP70 Direct interaction High 0.69 5
FKBP8 Physical association High 0.68 32
PDGFRA Physical association High 0.68 5
TNS3 Physical association High 0.68 5
CSK Physical association High 0.68 10
PDCD6IP Physical association High 0.68 15
SH3BGRL Physical association High 0.68 1
SH3GL2 Physical association High 0.68 16
TLR2 Physical association High 0.68 6
AGO2 Direct interaction High 0.68 28
GAB2 Physical association High 0.67 9
CFL1 Physical association High 0.67 12
HSPA4 Physical association High 0.67 5
AHNAK Physical association High 0.67 2
CAV2 Physical association High 0.67 3
CDK1 Physical association High 0.67 19
EZR Physical association High 0.65 17
HCK Physical association High 0.65 17
ITSN2 Physical association High 0.65 1
JUP Physical association High 0.65 14
TAB1 Physical association High 0.65 14
AP1B1 Physical association High 0.65 3
GOLM1 Direct interaction High 0.64 45
AKAP12 Physical association High 0.63 2
CAMLG Physical association High 0.63 18
CTTN Physical association High 0.63 5
FGR Physical association High 0.63 2
GABARAPL2 Physical association High 0.63 74
GRAP2 Physical association High 0.63 41
HDAC7 Physical association High 0.63 6
LAT Physical association High 0.63 6
LCP2 Physical association High 0.63 16
MAST1 Physical association High 0.63 3
NR3C1 Physical association High 0.63 10
PRKCA Physical association High 0.63 57
PTPN22 Physical association High 0.63 7
PTPRA Physical association High 0.63 3
SH2D3A Physical association High 0.63 1
SHC4 Physical association High 0.63 1
STAT5A Physical association High 0.63 7
STIP1 Physical association High 0.63 19
TRAF2 Physical association High 0.63 237
UCHL1 Physical association High 0.63 29
BECN1 Physical association High 0.63 48
IQGAP1 Direct interaction High 0.63 21
MAP3K12 Physical association High 0.62 2
EPGN Direct interaction High 0.62 1
EREG Direct interaction High 0.62 5
HBEGF Direct interaction High 0.61 3
LAPTM4B Physical association Medium 0.6 19
RABGEF1 Physical association Medium 0.6 13
PTPRC Direct interaction Medium 0.59 6
MIF Physical association Medium 0.59 4
ANXA2 Physical association Medium 0.58 9
STAM2 Physical association Medium 0.58 31
AURKA Direct interaction Medium 0.58 16
ROR1 Physical association Medium 0.58 2
PTPRG Physical association Medium 0.57 3
APPL1 Direct interaction Medium 0.57 33
NUMB Direct interaction Medium 0.57 10
NUMBL Direct interaction Medium 0.57 4
ERCC1 Physical association Medium 0.57 9
ERBB4 Physical association Medium 0.56 14
FKBP5 Physical association Medium 0.56 11
RUBCN Physical association Medium 0.56 14
SOS1 Physical association Medium 0.56 16
YES1 Physical association Medium 0.56 44
CMTM8 Physical association Medium 0.56 3
TOM1L1 Physical association Medium 0.56 6
ACTN4 Physical association Medium 0.55 14
ADRM1 Physical association Medium 0.55 9
AHSA1 Physical association Medium 0.55 4
AIP Physical association Medium 0.55 5
AKT1 Physical association Medium 0.55 58
ALDOA Physical association Medium 0.55 3
APP Physical association Medium 0.55 312
ARF6 Physical association Medium 0.55 7
ARHGEF7 Physical association Medium 0.55 14
ARPC5 Physical association Medium 0.55 4
ARRB1 Physical association Medium 0.55 33
ARRB2 Physical association Medium 0.55 23
ATIC Physical association Medium 0.55 1
CBR1 Physical association Medium 0.55 2
CDC25C Physical association Medium 0.55 8
CEND1 Physical association Medium 0.55 3
CHD5 Physical association Medium 0.55 1
CNTN2 Physical association Medium 0.55 2
COL9A3 Physical association Medium 0.55 1
CSRP1 Physical association Medium 0.55 3
DCTN2 Physical association Medium 0.55 35
DNAJC4 Physical association Medium 0.55 3
DOK1 Physical association Medium 0.55 3
DYNC1H1 Physical association Medium 0.55 34
EEF1G Physical association Medium 0.55 9
FAH Physical association Medium 0.55 6
FKBP4 Physical association Medium 0.55 10
FRK Physical association Medium 0.55 5
GOT1 Physical association Medium 0.55 1
GPM6B Physical association Medium 0.55 1
GSN Physical association Medium 0.55 126
HEXIM1 Physical association Medium 0.55 6
HSP90B1 Physical association Medium 0.55 5
IKBKG Physical association Medium 0.55 57
ITGB2 Physical association Medium 0.55 21
ITK Physical association Medium 0.55 4
KCTD9 Physical association Medium 0.55 77
LRP1 Physical association Medium 0.55 7
MAP3K3 Physical association Medium 0.55 16
MAP4K1 Physical association Medium 0.55 9
MAPK8 Physical association Medium 0.55 10
MAPK9 Physical association Medium 0.55 48
MAPT Physical association Medium 0.55 18
MATR3 Physical association Medium 0.55 14
MDH1 Physical association Medium 0.55 2
MEGF6 Physical association Medium 0.55 3
MGARP Physical association Medium 0.55 14
MOB4 Physical association Medium 0.55 5
NCK2 Physical association Medium 0.55 113
NDN Physical association Medium 0.55 11
NRG1 Physical association Medium 0.55 1
NTRK2 Physical association Medium 0.55 2
OAZ1 Physical association Medium 0.55 2
OLFM1 Physical association Medium 0.55 1
PAK1 Physical association Medium 0.55 28
PDK3 Physical association Medium 0.55 2
PIM1 Physical association Medium 0.55 7
PIN4 Physical association Medium 0.55 6
PLCH1 Physical association Medium 0.55 1
PNPLA2 Physical association Medium 0.55 1
PPP5C Physical association Medium 0.55 15
PRCC Physical association Medium 0.55 2
PRDX1 Physical association Medium 0.55 9
PRKAR1B Physical association Medium 0.55 55
PRKCE Physical association Medium 0.55 8
PRKCZ Physical association Medium 0.55 14
PSMA7 Physical association Medium 0.55 16
PSMD4 Physical association Medium 0.55 24
PTGDS Physical association Medium 0.55 10
PTPN18 Physical association Medium 0.55 3
RAB3A Physical association Medium 0.55 6
RAF1 Physical association Medium 0.55 40
RAP1GDS1 Physical association Medium 0.55 4
RAPGEF1 Physical association Medium 0.55 5
RET Physical association Medium 0.55 5
RGS4 Physical association Medium 0.55 1
RUSC2 Physical association Medium 0.55 2
SELENOP Physical association Medium 0.55 1
SH2D3C Physical association Medium 0.55 2
SH3BGRL3 Physical association Medium 0.55 2
SH3D21 Physical association Medium 0.55 1
SH3GL3 Physical association Medium 0.55 8
SLA2 Physical association Medium 0.55 2
SNAP25 Physical association Medium 0.55 6
SNCA Physical association Medium 0.55 124
SNX9 Physical association Medium 0.55 16
SOCS3 Physical association Medium 0.55 7
SOCS6 Physical association Medium 0.55 13
SORBS2 Physical association Medium 0.55 10
SOS2 Physical association Medium 0.55 6
SPCS2 Physical association Medium 0.55 3
STAP2 Physical association Medium 0.55 9
STAT2 Physical association Medium 0.55 6
SYN1 Physical association Medium 0.55 1
TMCO3 Physical association Medium 0.55 1
TNFRSF1A Physical association Medium 0.55 7
TPI1 Physical association Medium 0.55 4
UBE2V2 Physical association Medium 0.55 2
UROD Physical association Medium 0.55 4
VAV1 Physical association Medium 0.55 7
WASF3 Physical association Medium 0.55 1
WASL Physical association Medium 0.55 23
YWHAB Physical association Medium 0.55 78
PTPN6 Physical association Medium 0.55 19
PTPRD Physical association Medium 0.55 2
PTPRF Physical association Medium 0.55 2
LRRK1 Direct interaction Medium 0.54 4
IGFBP3 Physical association Medium 0.54 5
HGS Physical association Medium 0.54 177
AGER Physical association Medium 0.52 12
GPNMB Physical association Medium 0.52 1
SLC5A1 Physical association Medium 0.52 1
AMPH Physical association Medium 0.51 7
CNKSR2 Physical association Medium 0.51 2
DOK3 Physical association Medium 0.51 3
LZTS2 Physical association Medium 0.51 178
MBIP Physical association Medium 0.51 9
PPM1A Physical association Medium 0.51 9
PTPRH Physical association Medium 0.51 4
SKAP2 Physical association Medium 0.51 3
TACC3 Physical association Medium 0.51 20
USP33 Physical association Medium 0.51 1
ESR2 Physical association Medium 0.5 6
EXOC4 Physical association Medium 0.5 18
FANCD2 Physical association Medium 0.5 10
GABRA2 Physical association Medium 0.5 1
OS9 Physical association Medium 0.5 5
SEC61A1 Physical association Medium 0.5 3
SEL1L Physical association Medium 0.5 5
TUBB2A Physical association Medium 0.5 9
AXL Physical association Medium 0.47 3
HSPH1 Physical association Medium 0.47 1
EXOC7 Physical association Medium 0.46 15
GRK2 Physical association Medium 0.46 11
LRIG2 Physical association Medium 0.46 2
NEDD4 Physical association Medium 0.46 18
RIN1 Physical association Medium 0.46 38
STX6 Physical association Medium 0.46 24
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene EGFR is associated with 1 reactions in 1 different subsystems, and present in the compartments: Cytosol, Mitochondria. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Transport reactions Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria 587 1603 1

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