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TMEM14B
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Term
Gene name
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Class
Keyword
Chromosome
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Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
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Brain region
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Brain region
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Category
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Annotation
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Location
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Category
Cluster
Interacting gene
Number of interactions
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Category
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Score
Score
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Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

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  • TMEM14B
INTERACTION
Protein interactions
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

TMEM14B
Gene descriptioni

Full gene name according to HGNC.

Transmembrane protein 14B
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
HUMAN PROTEIN ATLAS INFORMATIONi

Summary of data presented in the Tissue section, with a representative image of protein expression (left) and an interactive chart showing the tissue-specific mRNA expression (right). The image and the chart are clickable and will redirect to more Tissue data.
This section contains information regarding the expression profiles of protein-coding genes in normal human tissue, both on the mRNA and protein level. The protein expression data is derived from antibody-based protein profiling using immunohistochemistry.

Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Unknown function (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Tau specificity score (RNA)i

Tau specificity score is a numerical indicator of the specificity of the gene expression across cells or tissues. The value ranges from 0 and 1, where 0 indicates identical expression across all cells/tissue types, while 1 indicates expression in a single cell/tissue type.

0.19
Tissue distribution (RNA)i

The RNA distribution category is based on mRNA expression levels in the analyzed samples based on a combination of data from HPA and GTEX. The categories include: detected in all, detected in many, detected in some, detected in single and not detected.

Detected in all
Protein evidencei

Evidence score for genes based on UniProt protein existence (UniProt evidence); neXtProt protein existence (neXtProt evidence);and a Human Protein Atlas antibody- or RNA based score (HPA evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable.

Read more
Evidence at protein level
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Not available
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.

Not available
INTERACTION SUMMARYi

In the Interaction summary a network plot of the gene's interaction partners is shown with nodes representing genes and edges representing the interaction type and the confidence (MI score) for the interaction. The type of interaction (direct interaction or physical association) is reflected by the colour of the edges, while the confidence of the interaction is reflected by the thickness of the edges. Scores larger than 0.6 (high confidence) have a thicker line than scores between 0.45 and 0.6 (medium confidence).

The highlight bar in the top of the plot can be used to colour the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass.

Nodes can also be highlighted using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Highlight:
Off
Subcell location
Predicted location
Tissue specificity
Protein class

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Unknown function

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


Number of interactions: 193 View all protein interaction data in IntAct
Interaction Interaction type Confidence MI score # Interactions
ABHD16A Physical association Medium 0.56 46
ABHD5 Physical association Medium 0.56 16
ACSL5 Physical association Medium 0.56 9
AGPAT3 Physical association Medium 0.56 16
AGPAT4 Physical association Medium 0.56 22
AGR3 Physical association Medium 0.56 21
APOC4 Physical association Medium 0.56 22
ARL6IP1 Physical association Medium 0.56 60
ARL8B Physical association Medium 0.56 5
ARV1 Physical association Medium 0.56 11
B4GALT7 Physical association Medium 0.56 5
BIK Physical association Medium 0.56 79
BLCAP Physical association Medium 0.56 14
BMP10 Physical association Medium 0.56 51
BTN2A2 Physical association Medium 0.56 33
C14orf180 Physical association Medium 0.56 38
C2CD2L Physical association Medium 0.56 31
CCL4 Physical association Medium 0.56 16
CD79A Physical association Medium 0.56 144
CEPT1 Physical association Medium 0.56 2
CFHR5 Physical association Medium 0.56 15
CIDEB Physical association Medium 0.56 58
CLDN10 Physical association Medium 0.56 7
CLDND2 Physical association Medium 0.56 24
CMTM8 Physical association Medium 0.56 3
CNIH2 Physical association Medium 0.56 5
CNIH3 Physical association Medium 0.56 23
CNIH4 Physical association Medium 0.56 2
COMT Physical association Medium 0.56 53
CPLX4 Physical association Medium 0.56 85
CREB3L1 Physical association Medium 0.56 163
CYB561 Physical association Medium 0.56 49
CYB5R3 Physical association Medium 0.56 50
DEFB103A Physical association Medium 0.56 9
DEFB103B Physical association Medium 0.56 9
DGAT2L6 Physical association Medium 0.56 37
DHRSX Physical association Medium 0.56 14
EBP Physical association Medium 0.56 159
EI24 Physical association Medium 0.56 8
EMC6 Physical association Medium 0.56 16
EPHX4 Physical association Medium 0.56 1
ERGIC3 Physical association Medium 0.56 186
EXTL1 Physical association Medium 0.56 4
FA2H Physical association Medium 0.56 25
FAM209A Physical association Medium 0.56 199
FIS1 Physical association Medium 0.56 22
FKBP8 Physical association Medium 0.56 32
GDAP1 Physical association Medium 0.56 29
GIMAP1 Physical association Medium 0.56 40
GPR152 Physical association Medium 0.56 163
GPX8 Physical association Medium 0.56 135
GYPA Physical association Medium 0.56 24
GYPC Physical association Medium 0.56 11
HEXB Physical association Medium 0.56 25
HIBADH Physical association Medium 0.56 31
HIGD1C Physical association Medium 0.56 11
HMOX1 Physical association Medium 0.56 25
HMOX2 Physical association Medium 0.56 44
HSD17B11 Physical association Medium 0.56 54
HSD3B1 Physical association Medium 0.56 8
IER3IP1 Physical association Medium 0.56 34
IFITM3 Physical association Medium 0.56 22
INSIG2 Physical association Medium 0.56 34
ITGAM Physical association Medium 0.56 34
JAGN1 Physical association Medium 0.56 102
KCNA1 Physical association Medium 0.56 13
KCNK1 Physical association Medium 0.56 8
LEPROTL1 Physical association Medium 0.56 68
LPAR3 Physical association Medium 0.56 46
MAL2 Physical association Medium 0.56 37
MARCHF5 Physical association Medium 0.56 25
MFSD5 Physical association Medium 0.56 46
MGAM Physical association Medium 0.56 5
MS4A13 Physical association Medium 0.56 52
MS4A4A Physical association Medium 0.56 12
NAT8 Physical association Medium 0.56 25
NDUFA3 Physical association Medium 0.56 14
NEU1 Physical association Medium 0.56 16
NINJ1 Physical association Medium 0.56 16
NINJ2 Physical association Medium 0.56 63
NIPAL3 Physical association Medium 0.56 8
ORMDL1 Physical association Medium 0.56 31
OTULINL Physical association Medium 0.56 11
PAGE1 Physical association Medium 0.56 12
PDPN Physical association Medium 0.56 1
PDZK1IP1 Physical association Medium 0.56 71
PEX11G Physical association Medium 0.56 5
PIGF Physical association Medium 0.56 8
PLLP Physical association Medium 0.56 33
PLP2 Physical association Medium 0.56 58
PMP22 Physical association Medium 0.56 52
PNLIPRP1 Physical association Medium 0.56 31
PRAF2 Physical association Medium 0.56 26
PTPMT1 Physical association Medium 0.56 25
RABAC1 Physical association Medium 0.56 48
RHOT2 Physical association Medium 0.56 4
SAR1B Physical association Medium 0.56 2
SCAMP5 Physical association Medium 0.56 15
SCN3B Physical association Medium 0.56 93
SCRG1 Physical association Medium 0.56 4
SERF1A Physical association Medium 0.56 11
SERF1B Physical association Medium 0.56 11
SERP1 Physical association Medium 0.56 37
SERP2 Physical association Medium 0.56 42
SFT2D1 Physical association Medium 0.56 27
SFT2D2 Physical association Medium 0.56 24
SFXN1 Physical association Medium 0.56 14
SFXN2 Physical association Medium 0.56 5
SFXN3 Physical association Medium 0.56 16
SLC16A10 Physical association Medium 0.56 3
SLC16A13 Physical association Medium 0.56 16
SLC19A3 Physical association Medium 0.56 9
SLC2A6 Physical association Medium 0.56 1
SLC30A3 Physical association Medium 0.56 22
SLC30A8 Physical association Medium 0.56 66
SLC35A4 Physical association Medium 0.56 23
SLC35E3 Physical association Medium 0.56 22
SLC35E4 Physical association Medium 0.56 12
SLC35F1 Physical association Medium 0.56 5
SLC35F6 Physical association Medium 0.56 8
SLC35G1 Physical association Medium 0.56 4
SLC39A2 Physical association Medium 0.56 45
SLC39A7 Physical association Medium 0.56 24
SLC48A1 Physical association Medium 0.56 6
SLC7A8 Physical association Medium 0.56 25
SMAGP Physical association Medium 0.56 35
SMPD2 Physical association Medium 0.56 11
SQLE Physical association Medium 0.56 3
STOM Physical association Medium 0.56 120
STX12 Physical association Medium 0.56 33
STX3 Physical association Medium 0.56 33
STX6 Physical association Medium 0.56 24
STX8 Physical association Medium 0.56 58
SUCNR1 Physical association Medium 0.56 2
SYNJ2BP Physical association Medium 0.56 22
TAP1 Physical association Medium 0.56 17
TAS2R19 Physical association Medium 0.56 6
TBC1D20 Physical association Medium 0.56 4
TEX44 Physical association Medium 0.56 11
THBD Physical association Medium 0.56 19
TIMM22 Physical association Medium 0.56 3
TIMM23 Physical association Medium 0.56 18
TIMMDC1 Physical association Medium 0.56 53
TLCD1 Physical association Medium 0.56 7
TM4SF4 Physical association Medium 0.56 19
TMEM11 Physical association Medium 0.56 40
TMEM120A Physical association Medium 0.56 21
TMEM120B Physical association Medium 0.56 46
TMEM121 Physical association Medium 0.56 12
TMEM147 Physical association Medium 0.56 44
TMEM14A Physical association Medium 0.56 21
TMEM14C Physical association Medium 0.56 35
TMEM187 Physical association Medium 0.56 13
TMEM19 Physical association Medium 0.56 34
TMEM199 Physical association Medium 0.56 15
TMEM203 Physical association Medium 0.56 34
TMEM220 Physical association Medium 0.56 2
TMEM222 Physical association Medium 0.56 30
TMEM229B Physical association Medium 0.56 34
TMEM243 Physical association Medium 0.56 37
TMEM254 Physical association Medium 0.56 35
TMEM255B Physical association Medium 0.56 5
TMEM267 Physical association Medium 0.56 6
TMEM42 Physical association Medium 0.56 41
TMEM50A Physical association Medium 0.56 9
TMEM50B Physical association Medium 0.56 18
TMEM51 Physical association Medium 0.56 32
TMEM60 Physical association Medium 0.56 86
TMEM69 Physical association Medium 0.56 2
TMEM97 Physical association Medium 0.56 49
TMUB1 Physical association Medium 0.56 7
TMX2 Physical association Medium 0.56 131
TOMM6 Physical association Medium 0.56 9
TSPAN2 Physical association Medium 0.56 34
TSPO Physical association Medium 0.56 13
TVP23B Physical association Medium 0.56 17
UBE2J1 Physical association Medium 0.56 34
UBE2J2 Physical association Medium 0.56 7
UBIAD1 Physical association Medium 0.56 33
UBXN8 Physical association Medium 0.56 7
UNC50 Physical association Medium 0.56 29
VAMP5 Physical association Medium 0.56 58
VRK2 Physical association Medium 0.56 8
VTI1B Physical association Medium 0.56 26
YIF1A Physical association Medium 0.56 66
YIPF1 Physical association Medium 0.56 30
YIPF2 Physical association Medium 0.56 19
YIPF4 Physical association Medium 0.56 28
YIPF6 Physical association Medium 0.56 72
ZDHHC11 Physical association Medium 0.56 1
ZDHHC22 Physical association Medium 0.56 12
ZDHHC24 Physical association Medium 0.56 17
ZFPL1 Physical association Medium 0.56 54
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

TMEM14B is not a metabolic protein

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