Protein interactions for GOLGA6L9 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	GOLGA6L9
Gene descriptionⁱ Full gene name according to HGNC.	Golgin A6 family like 9
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	1

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of data presented in the Tissue section, with a representative image of protein expression (left) and an interactive chart showing the tissue-specific mRNA expression (right). The image and the chart are clickable and will redirect to more Tissue data. This section contains information regarding the expression profiles of protein-coding genes in normal human tissue, both on the mRNA and protein level. The protein expression data is derived from antibody-based protein profiling using immunohistochemistry.
Tissue expression cluster (RNA)ⁱ The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.	Non-specific - Glycosylation (mainly)
Tissue specificity (RNA)ⁱ The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.	Low tissue specificity
Tau specificity score (RNA)ⁱ Tau specificity score is a numerical indicator of the specificity of the gene expression across cells or tissues. The value ranges from 0 and 1, where 0 indicates identical expression across all cells/tissue types, while 1 indicates expression in a single cell/tissue type.	0.55
Tissue distribution (RNA)ⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on a combination of data from HPA and GTEX. The categories include: detected in all, detected in many, detected in some, detected in single and not detected.	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); neXtProt protein existence (neXtProt evidence);and a Human Protein Atlas antibody- or RNA based score (HPA evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level
Subcellular locationⁱ Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.	Not available
Secretome annotationⁱ All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are: secreted into blood locally secreted or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.	Not available

INTERACTION SUMMARYⁱ

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Subcell location

Predicted location

Tissue specificity

Protein class

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e.g. Brain enriched, Localized to mitochondria, Non-specific - Glycosylation

Field

Cluster

Pathway

Number of interactions:

177

View all protein interaction data in IntAct

Interaction	Interaction type	Confidence	MI score	# Interactions
ARHGAP9	Physical association	Medium	0.56	10
ASXL1	Physical association	Medium	0.56	6
ATP6V1G1	Physical association	Medium	0.56	8
ATPAF2	Physical association	Medium	0.56	57
AVPI1	Physical association	Medium	0.56	29
BAHD1	Physical association	Medium	0.56	54
BHLHA9	Physical association	Medium	0.56	12
BYSL	Physical association	Medium	0.56	119
C1orf109	Physical association	Medium	0.56	121
C1orf35	Physical association	Medium	0.56	32
C3	Physical association	Medium	0.56	9
CABP2	Physical association	Medium	0.56	26
CATIP	Physical association	Medium	0.56	14
CAVIN3	Physical association	Medium	0.56	14
CBX8	Physical association	Medium	0.56	78
CCDC116	Physical association	Medium	0.56	24
CCDC120	Physical association	Medium	0.56	90
CCDC146	Physical association	Medium	0.56	42
CCDC185	Physical association	Medium	0.56	34
CDC37	Physical association	Medium	0.56	124
CDC73	Physical association	Medium	0.56	30
CDK18	Physical association	Medium	0.56	45
CEP72	Physical association	Medium	0.56	19
CEP95	Physical association	Medium	0.56	13
CNNM3	Physical association	Medium	0.56	59
CWF19L2	Physical association	Medium	0.56	65
DAXX	Physical association	Medium	0.56	78
DEF6	Physical association	Medium	0.56	19
DENND5A	Physical association	Medium	0.56	1
DES	Physical association	Medium	0.56	36
DOCK2	Physical association	Medium	0.56	36
DPF2	Physical association	Medium	0.56	10
DUSP26	Physical association	Medium	0.56	6
EAF1	Physical association	Medium	0.56	41
EIF3D	Physical association	Medium	0.56	27
ENKD1	Physical association	Medium	0.56	159
FAM110A	Physical association	Medium	0.56	41
FAM161A	Physical association	Medium	0.56	118
FAM161B	Physical association	Medium	0.56	54
FBXO28	Physical association	Medium	0.56	16
FEM1A	Physical association	Medium	0.56	5
FLYWCH1	Physical association	Medium	0.56	8
FXN	Physical association	Medium	0.56	8
GADD45GIP1	Physical association	Medium	0.56	55
GAS2L2	Physical association	Medium	0.56	29
GEM	Physical association	Medium	0.56	88
GLIS2	Physical association	Medium	0.56	27
GPANK1	Physical association	Medium	0.56	65
GTF2B	Physical association	Medium	0.56	34
HAPLN2	Physical association	Medium	0.56	36
HBZ	Physical association	Medium	0.56	18
HGS	Physical association	Medium	0.56	177
HOXB5	Physical association	Medium	0.56	47
HOXB9	Physical association	Medium	0.56	42
HOXC8	Physical association	Medium	0.56	74
INO80B	Physical association	Medium	0.56	49
ISCU	Physical association	Medium	0.56	16
KANK2	Physical association	Medium	0.56	151
KCTD9	Physical association	Medium	0.56	77
KLHL35	Physical association	Medium	0.56	7
KRT1	Physical association	Medium	0.56	32
KRT75	Physical association	Medium	0.56	103
LAGE3	Physical association	Medium	0.56	19
LENG1	Physical association	Medium	0.56	63
LGALS4	Physical association	Medium	0.56	6
LMO4	Physical association	Medium	0.56	85
LYSMD1	Physical association	Medium	0.56	10
M1AP	Physical association	Medium	0.56	11
MAB21L2	Physical association	Medium	0.56	11
MBD3L2	Physical association	Medium	0.56	7
MFAP1	Physical association	Medium	0.56	79
MOS	Physical association	Medium	0.56	46
MRPL11	Physical association	Medium	0.56	24
MYOZ3	Physical association	Medium	0.56	44
NAB2	Physical association	Medium	0.56	62
NDUFAF3	Physical association	Medium	0.56	13
NTAQ1	Physical association	Medium	0.56	302
NXF1	Physical association	Medium	0.56	62
ORC1	Physical association	Medium	0.56	7
PCDHB14	Physical association	Medium	0.56	13
PHF1	Physical association	Medium	0.56	45
PIN1	Physical association	Medium	0.56	112
PKN1	Physical association	Medium	0.56	59
PNMA5	Physical association	Medium	0.56	53
POLR1C	Physical association	Medium	0.56	87
POU6F2	Physical association	Medium	0.56	102
PPP1R18	Physical association	Medium	0.56	68
PRKAB2	Physical association	Medium	0.56	126
PRPF18	Physical association	Medium	0.56	63
PRPF31	Physical association	Medium	0.56	118
PWWP2B	Physical association	Medium	0.56	2
RANBP3L	Physical association	Medium	0.56	3
RASSF10	Physical association	Medium	0.56	19
RIN1	Physical association	Medium	0.56	38
RLN1	Physical association	Medium	0.56	1
RNF39	Physical association	Medium	0.56	6
RNPS1	Physical association	Medium	0.56	46
RTP5	Physical association	Medium	0.56	49
SCAND1	Physical association	Medium	0.56	40
SCNM1	Physical association	Medium	0.56	148
SH2D4A	Physical association	Medium	0.56	63
SHC3	Physical association	Medium	0.56	31
SLIRP	Physical association	Medium	0.56	11
SLX9	Physical association	Medium	0.56	3
SMARCD1	Physical association	Medium	0.56	104
SMARCE1	Physical association	Medium	0.56	56
SNAI1	Physical association	Medium	0.56	29
STAMBPL1	Physical association	Medium	0.56	22
STK25	Physical association	Medium	0.56	10
SUOX	Physical association	Medium	0.56	67
SUV39H1	Physical association	Medium	0.56	52
TACO1	Physical association	Medium	0.56	15
TEAD4	Physical association	Medium	0.56	30
THAP7	Physical association	Medium	0.56	47
TJAP1	Physical association	Medium	0.56	3
TLX3	Physical association	Medium	0.56	68
TMSB4X	Physical association	Medium	0.56	10
TRAF3IP3	Physical association	Medium	0.56	45
TRAF4	Physical association	Medium	0.56	73
TRIM14	Physical association	Medium	0.56	26
TSEN54	Physical association	Medium	0.56	14
TSFM	Physical association	Medium	0.56	8
TSGA10IP	Physical association	Medium	0.56	83
TSPYL4	Physical association	Medium	0.56	8
TXN2	Physical association	Medium	0.56	60
TYK2	Physical association	Medium	0.56	13
UBL4B	Physical association	Medium	0.56	4
UBTFL1	Physical association	Medium	0.56	22
USHBP1	Physical association	Medium	0.56	162
USP2	Physical association	Medium	0.56	78
VEZF1	Physical association	Medium	0.56	40
ZBTB16	Physical association	Medium	0.56	43
ZBTB24	Physical association	Medium	0.56	52
ZFP1	Physical association	Medium	0.56	17
ZKSCAN3	Physical association	Medium	0.56	12
ZMAT2	Physical association	Medium	0.56	44
ZNF124	Physical association	Medium	0.56	45
ZNF155	Physical association	Medium	0.56	4
ZNF165	Physical association	Medium	0.56	31
ZNF17	Physical association	Medium	0.56	11
ZNF20	Physical association	Medium	0.56	43
ZNF205	Physical association	Medium	0.56	6
ZNF230	Physical association	Medium	0.56	6
ZNF264	Physical association	Medium	0.56	14
ZNF32	Physical association	Medium	0.56	9
ZNF329	Physical association	Medium	0.56	21
ZNF35	Physical association	Medium	0.56	24
ZNF414	Physical association	Medium	0.56	42
ZNF417	Physical association	Medium	0.56	140
ZNF438	Physical association	Medium	0.56	50
ZNF479	Physical association	Medium	0.56	5
ZNF48	Physical association	Medium	0.56	14
ZNF490	Physical association	Medium	0.56	23
ZNF497	Physical association	Medium	0.56	41
ZNF524	Physical association	Medium	0.56	22
ZNF552	Physical association	Medium	0.56	27
ZNF578	Physical association	Medium	0.56	12
ZNF580	Physical association	Medium	0.56	15
ZNF581	Physical association	Medium	0.56	82
ZNF587	Physical association	Medium	0.56	102
ZNF599	Physical association	Medium	0.56	7
ZNF624	Physical association	Medium	0.56	4
ZNF628	Physical association	Medium	0.56	2
ZNF629	Physical association	Medium	0.56	14
ZNF648	Physical association	Medium	0.56	50
ZNF669	Physical association	Medium	0.56	15
ZNF696	Physical association	Medium	0.56	30
ZNF764	Physical association	Medium	0.56	26
ZNF785	Physical association	Medium	0.56	13
ZNF792	Physical association	Medium	0.56	46
ZNF80	Physical association	Medium	0.56	9
ZNF835	Physical association	Medium	0.56	54
ZNF837	Physical association	Medium	0.56	68
ZNF844	Physical association	Medium	0.56	11
ZNHIT1	Physical association	Medium	0.56	22
ZSCAN23	Physical association	Medium	0.56	17
ZSCAN26	Physical association	Medium	0.56	15
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METABOLIC SUMMARYⁱ In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.
GOLGA6L9 is not a metabolic protein